RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB50765" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJEB50765 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3945646 3945646 PRJEB50765_P_NODE_2584_length_174_cov_1.496350_g2560_i0 PRJEB50765 2584 174 1.49635 2.603649 Epilithonimonas vandammei 2487072 Bacteria Bacteria 318 1.31e-82   NTclustered gi|1527187866|gb|CP034161.1| 2487072 g2560 i0 100 486.5 172 0 99 0 1 172 807998 808169 Epilithonimonas vandammei strain F5649 chromosome, complete genome blastn 84651 318 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas vandammei
9919540 9919540 PRJEB50765_P_NODE_3148_length_155_cov_1.000000_g3124_i0 PRJEB50765 3148 155 1 1.55 Chryseobacterium 59732 Bacteria Bacteria 287 3.21e-73   NTclustered gi|2429070341|gb|CP115857.1| 373672 g3124 i0 100 558.316129032258 155 0 100 0 1 155 1757508 1757354 Chryseobacterium gambrini strain PL22-1A chromosome, complete genome blastn 86539 287 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gambrini
17569186 17569186 PRJEB50765_P_NODE_3274_length_151_cov_2.070175_g3250_i0 PRJEB50765 3274 151 2.070175 3.12596425 Chryseobacterium 59732 Bacteria Bacteria 278 1.87e-70   NTclustered gi|1276741219|gb|CP022986.1| 1265445 g3250 i0 100 411.258278145695 150 0 99 0 1 150 1203151 1203002 Chryseobacterium camelliae strain Dolsongi-HT1, complete genome blastn 62100 278 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium camelliae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;