RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB50765" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB50765 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
119553 119553 PRJEB50765_P_NODE_1521_length_245_cov_2.480769_g1497_i0 PRJEB50765 1521 245 2.480769 6.07788405 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 3.6e-20   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g1497 i0 92.308 8.14285714285714 78 6 32 0 18 95 1089 1166 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 1995 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8644450 8644450 PRJEB50765_P_NODE_2687_length_170_cov_1.428571_g2663_i0 PRJEB50765 2687 170 1.428571 2.4285707 Vermamoeba 1260114 Tubulinea other_Eukaryota 315 1.64e-81   NTclustered gi|2777861736|gb|PQ072230.1| 5778 g2663 i0 100 100.005882352941 170 0 100 0 1 170 1565 1396 Vermamoeba vermiformis strain CCAP_1534_12_consensus_sequence small subunit ribosomal RNA gene, partial sequence blastn 17001 315 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23071561 23071561 PRJEB50765_P_NODE_1979_length_205_cov_2.494048_g1955_i0 PRJEB50765 1979 205 2.494048 5.1127984 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 322 1.24e-83   NTclustered gi|423291980|gb|JQ519435.1| 5778 g1955 i0 95.098 92.4731707317073 204 10 99 0 1 204 511 714 Vermamoeba vermiformis clone JG10.93_f2 actin gene, partial cds blastn 18957 322 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;