RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB50332" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB50332 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3945541 3945541 PRJEB50332_P_NODE_2604_length_353_cov_1.818493_g2522_i0 PRJEB50332 2604 353 1.818493 6.41928029 Pristionchus hoplostomus 1355913 Nematoda Nematoda 82.4 4.26e-11   NTclustered gi|524845292|gb|KC819356.1| 1355913 g2522 i0 88.571 1.5070821529745 70 5 20 3 12 80 324 391 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 532 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
6497711 6497711 PRJEB50332_P_NODE_5266_length_267_cov_1.893204_g5184_i0 PRJEB50332 5266 267 1.893204 5.05485468 Caenorhabditis briggsae 6238 Nematoda Nematoda 161 3.89e-35   NTclustered gi|2158433782|ref|XM_045239146.1| 6238 g5184 i0 78.74 8.59550561797753 254 45 93 6 3 250 758 508 Caenorhabditis briggsae Protein CBR-ACO-1 (Cbr-aco-1), partial mRNA blastn 2295 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;