RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB50332" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB50332 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2669611 2669611 PRJEB50332_P_NODE_9803_length_225_cov_2.378049_g9721_i0 PRJEB50332 9803 225 2.378049 5.35061025 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2912994531|dbj|AP039599.1| 145626 g9721 i0 90.476 0.186666666666667 42 3 18 1 33 73 5800052 5800011 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 18, sequence blastn 42 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
9046592 9046592 PRJEB50332_P_NODE_11208_length_218_cov_1.242038_g11126_i0 PRJEB50332 11208 218 1.242038 2.70764284 Mizuhopecten yessoensis 6573 Mollusca Mollusca 110 1.13e-19   NTclustered gi|1207980031|ref|XM_021483861.1| 6573 g11126 i0 80.392 3.93119266055046 153 22 68 7 70 218 609 461 PREDICTED: Mizuhopecten yessoensis 40S ribosomal protein S5 (LOC110440710), mRNA blastn 857 110 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
11597791 11597791 PRJEB50332_P_NODE_3110_length_328_cov_1.696629_g3028_i0 PRJEB50332 3110 328 1.696629 5.56494312 Pecten maximus 6579 Mollusca Mollusca 198 3.75e-46   NTclustered gi|1835480281|ref|XM_033903157.1| 6579 g3028 i0 84.135 64.5060975609756 208 30 63 3 5 210 996 1202 PREDICTED: Pecten maximus V-type proton ATPase catalytic subunit A (LOC117341302), mRNA blastn 21158 198 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;