RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB50332" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJEB50332 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17970956 17970956 PRJEB50332_P_NODE_12695_length_211_cov_0.866667_g12613_i0 PRJEB50332 12695 211 0.866667 1.82866737 Didymium iridis 5793 Evosea other_Eukaryota 385 1.61e-102   NTclustered gi|2687|emb|X60210.1| 5793 g12613 i0 99.526 1 211 1 100 0 1 211 5532 5322 D.iridis LSU rRNA gene blastn 211 385 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
19245037 19245037 PRJEB50332_P_NODE_2216_length_378_cov_1.542587_g2135_i0 PRJEB50332 2216 378 1.542587 5.83097886 Heterostelium album 2086695 Evosea other_Eukaryota 62.1 5.98e-5   NTclustered gi|1160555948|ref|XM_020573799.1| 670386 g2135 i0 85.965 0.150793650793651 57 8 15 0 14 70 93 149 Polysphondylium pallidum PN500 40S ribosomal protein S30 (rps30-2), partial mRNA blastn 57 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;