RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJEB49404" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 15 ✖

bioproject 1

  • PRJEB49404 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3541449 3541449 PRJEB49404_P_NODE_305003_length_261_cov_0.878378_g291202_i0 PRJEB49404 305003 261 0.878378 2.29256658 Pahexavirus 1982251 Viruses Viruses 422 1.57e-113   NTclustered gi|1338076736|gb|MG820636.1| 2079403 g291202 i0 95.785 99.9310344827586 261 11 100 0 1 261 9558 9818 Propionibacterium phage pa29399-1-D_2, complete genome blastn 26082 422 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Pahexavirus Propionibacterium phage pa29399-1-D_2
3541642 3541642 PRJEB49404_P_NODE_591323_length_161_cov_1.344262_g577522_i0 PRJEB49404 591323 161 1.344262 2.16426182 Pahexavirus 1982251 Viruses Viruses 283 4.3599999999999995e-72   NTclustered gi|330858398|ref|NC_015454.1| 504501 g577522 i0 98.742 99.4782608695652 159 2 99 0 1 159 13182 13024 Propionibacterium phage PAD20 endogenous virus, complete genome blastn 16016 283 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Pahexavirus Pahexavirus PAD20
9028225 9028225 PRJEB49404_P_NODE_298168_length_265_cov_1.632743_g284367_i0 PRJEB49404 298168 265 1.632743 4.32676895 Pijolavirus Pf17397FPD1 3431676 Viruses Viruses 390 4.519999999999999e-104   NTclustered gi|2190146233|gb|OM131411.1| 2914026 g284367 i0 93.258 2.86037735849057 267 14 100 3 1 265 15808 16072 Pseudomonas phage Pf17397_F_PD1, complete genome blastn 758 390 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Pijolavirus Pijolavirus Pf17397FPD1
11194300 11194300 PRJEB49404_P_NODE_311489_length_257_cov_1.128440_g297688_i0 PRJEB49404 311489 257 1.12844 2.9000908 Aliceevansviridae 3044455 Viruses Viruses 464 2.5299999999999998e-126   NTclustered gi|2437984287|ref|NC_070663.1| 2365018 g297688 i0 99.225 101.019455252918 258 1 100 1 1 257 20848 21105 Streptococcus phage CHPC1046, complete genome blastn 25962 464 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Aliceevansviridae Moineauvirus Moineauvirus CHPC1046
11573564 11573564 PRJEB49404_P_NODE_174290_length_388_cov_1.893983_g160497_i0 PRJEB49404 174290 388 1.893983 7.3486540400000004 Escherichia phage a48 3017792 Viruses Viruses 279 1.56e-70   NTclustered gi|2419110972|gb|OQ067375.1| 3017792 g160497 i0 79.744 100.376288659794 390 75 100 4 1 388 30693 31080 Escherichia phage a48, complete genome blastn 38946 279 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Pantevenvirales Straboviridae Tequatrovirus Escherichia phage a48
11584762 11584762 PRJEB49404_P_NODE_413290_length_209_cov_1.205882_g399489_i0 PRJEB49404 413290 209 1.205882 2.52029338 Ilarvirus PDV 3429929 Viruses Viruses 370 4.45e-98   NTclustered gi|1027931608|gb|KU215408.1| 33760 g399489 i0 98.571 29.1483253588517 210 1 99 1 1 208 1218 1427 Prune dwarf virus isolate Lambert 43 segment RNA1, partial sequence blastn 6092 370 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Ilarvirus PDV
11592019 11592019 PRJEB49404_P_NODE_562370_length_167_cov_1.281250_g548569_i0 PRJEB49404 562370 167 1.28125 2.1396875 Ripastyr virus 3131364 Viruses Viruses 187 3.68e-43   NTclustered gi|2717322326|gb|PP173666.1| 3131364 g548569 i0 88.05 267.245508982036 159 17 95 2 1 158 635 792 MAG: Ripastyr virus isolate MP3_k141_6580 genomic sequence blastn 44630 187 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripastyr virus
12850575 12850575 PRJEB49404_P_NODE_213131_length_336_cov_42.040404_g199332_i0 PRJEB49404 213131 336 42.040404 141.25575744 Betacoronavirus pandemicum 3418604 Viruses Viruses 128 5.12e-25   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g199332 i0 97.368 56.5595238095238 76 0 32 2 66 139 515 590 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 19004 128 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12865361 12865361 PRJEB49404_P_NODE_524191_length_176_cov_0.985401_g510390_i0 PRJEB49404 524191 176 0.985401 1.73430576 Sopafab virus 3131770 Viruses Viruses 291 2.89e-74   NTclustered gi|2717323354|gb|PP174071.1| 3131770 g510390 i0 98.193 90.75 166 3 94 0 1 166 180 15 MAG: Sopafab virus isolate SP1C_k141_220867 genomic sequence blastn 15972 291 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Sopafab virus
14142442 14142442 PRJEB49404_P_NODE_570452_length_165_cov_1.801587_g556651_i0 PRJEB49404 570452 165 1.801587 2.97261855 Caudoviricetes sp. 2832643 Viruses Viruses 305 9.59e-79   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g556651 i0 100 223.927272727273 165 0 100 0 1 165 18168 18332 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 36948 305 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
14146049 14146049 PRJEB49404_P_NODE_647472_length_151_cov_1.080357_g633671_i0 PRJEB49404 647472 151 1.080357 1.63133907 Ilarvirus PDV 3429929 Viruses Viruses 257 2.43e-64   NTclustered gi|1700879364|gb|MK834274.1| 33760 g633671 i0 97.351 38.4503311258278 151 4 100 0 1 151 2472 2622 Prune dwarf virus isolate GBCV_PDV001 segment RNA1 replicase gene, complete cds blastn 5806 257 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Ilarvirus PDV
16669274 16669274 PRJEB49404_P_NODE_10954_length_2411_cov_263.969646_g388_i22 PRJEB49404 10954 2411 263.969646 6364.30816506 Gammaretrovirus murleu 3428959 Viruses Viruses 4183 0   NTclustered gi|1167936699|gb|KY574508.1| 11786 g388 i22 97.973 100.350891746163 2417 40 99 1 1 2408 2076 4492 Murine leukemia virus isolate Akv2-C25, complete genome blastn 241946 4183 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17944069 17944069 PRJEB49404_P_NODE_10955_length_2411_cov_223.704469_g388_i23 PRJEB49404 10955 2411 223.704469 5393.51474759 Gammaretrovirus murleu 3428959 Viruses Viruses 3917 0   NTclustered gi|1167936699|gb|KY574508.1| 11786 g388 i23 95.987 100.352136043136 2417 88 99 1 4 2411 4492 2076 Murine leukemia virus isolate Akv2-C25, complete genome blastn 241949 3917 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17960591 17960591 PRJEB49404_P_NODE_465475_length_191_cov_2.618421_g451674_i0 PRJEB49404 465475 191 2.618421 5.00118411 Cutibacterium phage CaCom2 3053652 Viruses Viruses 329 6.78e-86   NTclustered gi|2523356271|gb|OR088869.1| 3053652 g451674 i0 97.895 99.2513089005236 190 4 99 0 2 191 12677 12866 Cutibacterium phage CaCom2, complete genome blastn 18957 329 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Pahexavirus Cutibacterium phage CaCom2
25217314 25217314 PRJEB49404_P_NODE_653200_length_150_cov_1.108108_g639399_i0 PRJEB49404 653200 150 1.108108 1.662162 Tequatrovirus 10663 Viruses Viruses 278 1.85e-70   NTclustered gi|2721715921|emb|OZ035787.1| 10665 g639399 i0 100 99.6933333333333 150 0 100 0 1 150 38207 38356 Tequatrovirus T4 genome assembly, chromosome: 1 blastn 14954 278 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Pantevenvirales Straboviridae Tequatrovirus Tequatrovirus T4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;