RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB49404" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 5 ✖

bioproject 1

  • PRJEB49404 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11584762 11584762 PRJEB49404_P_NODE_413290_length_209_cov_1.205882_g399489_i0 PRJEB49404 413290 209 1.205882 2.52029338 Ilarvirus PDV 3429929 Viruses Viruses 370 4.45e-98   NTclustered gi|1027931608|gb|KU215408.1| 33760 g399489 i0 98.571 29.1483253588517 210 1 99 1 1 208 1218 1427 Prune dwarf virus isolate Lambert 43 segment RNA1, partial sequence blastn 6092 370 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Ilarvirus PDV
11592019 11592019 PRJEB49404_P_NODE_562370_length_167_cov_1.281250_g548569_i0 PRJEB49404 562370 167 1.28125 2.1396875 Ripastyr virus 3131364 Viruses Viruses 187 3.68e-43   NTclustered gi|2717322326|gb|PP173666.1| 3131364 g548569 i0 88.05 267.245508982036 159 17 95 2 1 158 635 792 MAG: Ripastyr virus isolate MP3_k141_6580 genomic sequence blastn 44630 187 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripastyr virus
12850575 12850575 PRJEB49404_P_NODE_213131_length_336_cov_42.040404_g199332_i0 PRJEB49404 213131 336 42.040404 141.25575744 Betacoronavirus pandemicum 3418604 Viruses Viruses 128 5.12e-25   NTclustered gi|2165834316|emb|OV196022.1| 2697049 g199332 i0 97.368 56.5595238095238 76 0 32 2 66 139 515 590 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 19004 128 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12865361 12865361 PRJEB49404_P_NODE_524191_length_176_cov_0.985401_g510390_i0 PRJEB49404 524191 176 0.985401 1.73430576 Sopafab virus 3131770 Viruses Viruses 291 2.89e-74   NTclustered gi|2717323354|gb|PP174071.1| 3131770 g510390 i0 98.193 90.75 166 3 94 0 1 166 180 15 MAG: Sopafab virus isolate SP1C_k141_220867 genomic sequence blastn 15972 291 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Sopafab virus
14146049 14146049 PRJEB49404_P_NODE_647472_length_151_cov_1.080357_g633671_i0 PRJEB49404 647472 151 1.080357 1.63133907 Ilarvirus PDV 3429929 Viruses Viruses 257 2.43e-64   NTclustered gi|1700879364|gb|MK834274.1| 33760 g633671 i0 97.351 38.4503311258278 151 4 100 0 1 151 2472 2622 Prune dwarf virus isolate GBCV_PDV001 segment RNA1 replicase gene, complete cds blastn 5806 257 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Ilarvirus PDV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;