RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB48872" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB48872 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3908851 3908851 PRJEB48872_P_NODE_529424_length_185_cov_2.116438_g513612_i0 PRJEB48872 529424 185 2.116438 3.9154103 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 283 5.15e-72   NTclustered gi|2874253885|emb|OY970060.1| 171953 g513612 i0 94.536 40.5513513513514 183 10 99 0 2 184 4841909 4841727 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 7502 283 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6461227 6461227 PRJEB48872_P_NODE_535646_length_184_cov_1.131034_g519834_i0 PRJEB48872 535646 184 1.131034 2.08110256 Paludibaculum fermentans 1473598 Bacteria Bacteria 106 1.19e-18   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g519834 i0 90.123 25.070652173913 81 8 44 0 55 135 7072674 7072754 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 4613 106 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
6464449 6464449 PRJEB48872_P_NODE_601306_length_168_cov_1.565891_g585494_i0 PRJEB48872 601306 168 1.565891 2.63069688 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 311 2.11e-80   NTclustered gi|217038907|gb|EU810998.1| 171953 g585494 i0 100 20.5535714285714 168 0 100 0 1 168 52 219 Uncultured Acidobacteria bacterium clone 01QCK 23S ribosomal RNA gene, partial sequence blastn 3453 311 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
10280568 10280568 PRJEB48872_P_NODE_422009_length_221_cov_1.582418_g406197_i0 PRJEB48872 422009 221 1.582418 3.49714378 Acidobacteriota bacterium 1978231 Bacteria Bacteria 370 4.76e-98   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g406197 i0 96.833 19.3393665158371 221 7 100 0 1 221 3300827 3301047 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 4274 370 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;