RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJEB48872" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB48872 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1349429 1349429 PRJEB48872_P_NODE_369522_length_245_cov_1.631068_g353710_i0 PRJEB48872 369522 245 1.631068 3.9961166 Globisporangium rostratifingens 2711122 SAR_Eukaryotes SAR_Eukaryotes 409 1.1399999999999998e-109   NTclustered gi|297578576|gb|AY707986.2| 2711122 g353710 i0 96.735 99.5673469387755 245 8 100 0 1 245 2184 2428 Pythium rostratifingens strain CBS 115464 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24394 409 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium rostratifingens
1365953 1365953 PRJEB48872_P_NODE_86542_length_716_cov_10.868538_g71954_i0 PRJEB48872 86542 716 10.868538 77.81873208 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 817 0   NTclustered gi|90655144|gb|DQ361265.1| 907947 g71954 i0 93.613 76.481843575419 548 33 76 2 1 547 7 553 Pythium vexans large subunit ribosomal RNA gene, partial sequence blastn 54761 817 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
3894697 3894697 PRJEB48872_P_NODE_231404_length_349_cov_1.945161_g215593_i0 PRJEB48872 231404 349 1.945161 6.78861189 Globisporangium rostratum 2711123 SAR_Eukaryotes SAR_Eukaryotes 579 1.2199999999999999e-160   NTclustered gi|292680107|dbj|AB468713.1| 2711123 g215593 i0 96.562 93.2550143266476 349 12 100 0 1 349 746 398 Globisporangium rostratum gene for large subunit ribosomal RNA, partial sequence, strain: OPU1441 blastn 32546 579 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium rostratum
3896868 3896868 PRJEB48872_P_NODE_278024_length_304_cov_2.192453_g262212_i0 PRJEB48872 278024 304 2.192453 6.66505712 Schizocladia ischiensis 196139 SAR_Eukaryotes SAR_Eukaryotes 316 9.099999999999999e-82   NTclustered gi|2018127600|ref|NC_053868.1| 196139 g262212 i0 92.342 208.009868421053 222 17 100 0 7 228 86125 85904 Schizocladia ischiensis culture CCMP:2287 chloroplast, complete genome blastn 63235 316 1 Eukaryota Sar           Schizocladia Schizocladia ischiensis
9919008 9919008 PRJEB48872_P_NODE_617808_length_165_cov_0.904762_g601996_i0 PRJEB48872 617808 165 0.904762 1.4928573 Thalassiosira 35127 SAR_Eukaryotes SAR_Eukaryotes 294 2.08e-75   NTclustered gi|2632235341|gb|OR922723.1| 35128 g601996 i0 98.788 100 165 2 100 0 1 165 3584 3748 Thalassiosira pseudonana strain AGSB0188 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16500 294 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
17919440 17919440 PRJEB48872_P_NODE_215375_length_368_cov_2.012158_g199567_i0 PRJEB48872 215375 368 2.012158 7.40474144 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 580 3.609999999999999e-161   NTclustered gi|2651357788|gb|PP174303.1| 41631 g199567 i0 95.135 100.375 370 15 100 2 1 368 3736 3368 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 36938 580 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
24295963 24295963 PRJEB48872_P_NODE_264860_length_315_cov_8.130435_g249048_i0 PRJEB48872 264860 315 8.130435 25.61087025 Babesia bigemina 5866 SAR_Eukaryotes SAR_Eukaryotes 538 1.8599999999999993e-148   NTclustered gi|833494855|ref|XM_012915027.1| 5866 g249048 i0 97.46 1498.31428571429 315 8 100 0 1 315 226 540 Babesia bigemina hypothetical protein, conserved partial mRNA blastn 471969 538 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
24298499 24298499 PRJEB48872_P_NODE_319160_length_274_cov_2.076596_g303348_i0 PRJEB48872 319160 274 2.076596 5.68987304 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 344 3.71e-90   NTclustered gi|2440150|emb|X75631.1| 4788 g303348 i0 89.531 100.379562043796 277 22 100 7 1 274 3011 2739 P.megasperma gene for 28S ribosomal RNA blastn 27504 344 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
25216949 25216949 PRJEB48872_P_NODE_680340_length_153_cov_1.429825_g664528_i0 PRJEB48872 680340 153 1.429825 2.18763225 Chrysophyceae 2825 SAR_Eukaryotes SAR_Eukaryotes 254 3.2e-63   NTclustered gi|219903753|emb|FM955256.1| 2996 g664528 i0 97.945 95.4248366013072 146 3 95 0 8 153 249 394 Hydrurus foetidus partial 18S rRNA gene blastn 14600 254 1 Eukaryota Sar     Chrysophyceae Hydrurales Hydruraceae Hydrurus Hydrurus foetidus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;