RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB48218" and tax_kingdom = "Loebvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Loebvirae · 3 ✖

bioproject 1

  • PRJEB48218 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1336941 1336941 PRJEB48218_S_NODE_26762_length_165_cov_2.919118_g25800_i0 PRJEB48218 26762 165 2.919118 4.8165447 Tubulavirales sp. 2833306 Viruses Viruses 224 2.76e-54   NTclustered gi|2906153236|gb|PQ646714.1| 2833306 g25800 i0 93.377 0.915151515151515 151 10 92 0 1 151 6832 6982 MAG: Tubulavirales sp. isolate k127_4197263 genomic sequence blastn 151 224 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales     Tubulavirales sp.
14091058 14091058 PRJEB48218_S_NODE_3472_length_672_cov_4.598756_g2646_i0 PRJEB48218 3472 672 4.598756 30.90364032 Tubulavirales sp. 2833306 Viruses Viruses 785 0   NTclustered gi|2906153236|gb|PQ646714.1| 2833306 g2646 i0 88.45 0.979166666666667 658 66 97 9 1 653 6201 6853 MAG: Tubulavirales sp. isolate k127_4197263 genomic sequence blastn 658 785 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales     Tubulavirales sp.
23014426 23014426 PRJEB48218_S_NODE_19239_length_215_cov_2.924731_g18277_i0 PRJEB48218 19239 215 2.924731 6.28817165 Tubulavirales sp. 2833306 Viruses Viruses 76.8 1.12e-9   NTclustered gi|2906153236|gb|PQ646714.1| 2833306 g18277 i0 92.453 0.246511627906977 53 4 25 0 1 53 4864 4916 MAG: Tubulavirales sp. isolate k127_4197263 genomic sequence blastn 53 76.8 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales     Tubulavirales sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;