RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB43370" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB43370 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1334504 1334504 PRJEB43370_P_NODE_1822_length_323_cov_1.937956_g1779_i0 PRJEB43370 1822 323 1.937956 6.25959788 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 545 1.14e-150   NTclustered gi|1042160945|dbj|LC102279.1| 1789826 g1779 i0 97.492 6.43034055727554 319 8 99 0 5 323 509 191 Copromyxa sp. MK-2016 gene for elongation factor 2 alpha, partial cds, strain: ZEB1 blastn 2077 545 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
5162544 5162544 PRJEB43370_P_NODE_65_length_1410_cov_8.733284_g51_i0 PRJEB43370 65 1410 8.733284 123.1393044 Copromyxa protea 931554 Tubulinea other_Eukaryota 1563 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g51 i0 87.222 27.4234042553191 1393 152 97 16 15 1385 1 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 38667 1563 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
7712628 7712628 PRJEB43370_P_NODE_7847_length_168_cov_1.310924_g7804_i0 PRJEB43370 7847 168 1.310924 2.20235232 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 311 2.11e-80   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g7804 i0 100 76.3333333333333 168 0 100 0 1 168 1721 1554 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 12824 311 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
15362398 15362398 PRJEB43370_P_NODE_333_length_728_cov_3.811487_g294_i0 PRJEB43370 333 728 3.811487 27.74762536 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 1158 0   NTclustered gi|1042160935|dbj|LC102274.1| 1789826 g294 i0 98.333 96.6153846153846 660 11 91 0 1 660 136 795 Copromyxa sp. MK-2016 gene for actin, partial cds, strain: ZEB1_cl3 blastn 70336 1158 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
21736941 21736941 PRJEB43370_P_NODE_9978_length_164_cov_0.904348_g9935_i0 PRJEB43370 9978 164 0.904348 1.48313072 Nolandella sp. LAK-2012 1260117 Tubulinea other_Eukaryota 117 4.79e-22   NTclustered gi|421976359|gb|JQ519496.1| 1260117 g9935 i0 85.586 6.6280487804878 111 16 68 0 6 116 626 516 Nolandella sp. LAK-2012 elongation factor 2 alpha gene, partial cds blastn 1087 117 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
24285970 24285970 PRJEB43370_P_NODE_1020_length_431_cov_2.400524_g977_i0 PRJEB43370 1020 431 2.400524 10.34625844 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 797 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g977 i0 100 69.0069605568445 431 0 100 0 1 431 574 1004 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 29742 797 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;