RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB43370" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB43370 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5162509 5162509 PRJEB43370_P_NODE_2865_length_256_cov_1.946860_g2822_i0 PRJEB43370 2865 256 1.94686 4.9839616 Tylopharynx sp. WEM-2009 669147 Nematoda Nematoda 135 2.25e-27   NTclustered gi|256709231|gb|GQ422268.1| 669147 g2822 i0 80.769 2.91796875 182 28 69 5 47 223 10 189 Tylopharynx sp. WEM-2009 small subunit ribosomal protein 28 (rps-28) mRNA, partial cds blastn 747 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylopharyngidae Tylopharynx Tylopharynx sp. WEM-2009
5162574 5162574 PRJEB43370_P_NODE_9825_length_164_cov_0.904348_g9782_i0 PRJEB43370 9825 164 0.904348 1.48313072 Pristionchus pauli 376545 Nematoda Nematoda 110 8.01e-20   NTclustered gi|150982019|gb|EF634598.1| 376545 g9782 i0 93.243 1.4390243902439 74 5 45 0 55 128 110 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 236 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
11193301 11193301 PRJEB43370_P_NODE_2449_length_276_cov_1.731278_g2406_i0 PRJEB43370 2449 276 1.731278 4.77832728 Strongyloides 6247 Nematoda Nematoda 228 3.9299999999999985e-55   NTclustered gi|199600273|tpg|BK006066.1| 6248 g2406 i0 81.522 82.213768115942 276 51 100 0 1 276 1077 802 TPA_inf: Strongyloides stercoralis eukaryotic translation elongation factor 1A (eft-2) mRNA, complete cds blastn 22691 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis
16636985 16636985 PRJEB43370_P_NODE_2754_length_261_cov_0.981132_g2711_i0 PRJEB43370 2754 261 0.981132 2.56075452 Strongyloides ratti 34506 Nematoda Nematoda 185 2.2499999999999994e-42   NTclustered gi|1376154049|ref|XM_024646386.1| 34506 g2711 i0 80.408 13.0574712643678 245 46 93 2 16 259 316 559 Strongyloides ratti V-type proton ATPase subunit B, kidney (SRAE_X000121000), partial mRNA blastn 3408 185 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22666819 22666819 PRJEB43370_P_NODE_1998_length_308_cov_1.378378_g1955_i0 PRJEB43370 1998 308 1.378378 4.24540424 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 370 6.99e-98   NTclustered gi|268619129|gb|GU130148.1| 6326 g1955 i0 88.312 101.850649350649 308 36 100 0 1 308 875 568 Bursaphelenchus xylophilus actin-4 mRNA, complete cds blastn 31370 370 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
23012159 23012159 PRJEB43370_P_NODE_3319_length_240_cov_1.361257_g3276_i0 PRJEB43370 3319 240 1.361257 3.2670168 Acrostichus rhynchophori 1538711 Nematoda Nematoda 139 1.61e-28   NTclustered gi|675118829|gb|KJ877294.1| 1538711 g3276 i0 82.803 3.09583333333333 157 25 65 2 24 179 198 43 Acrostichus rhynchophori strain RGD193 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 743 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus rhynchophori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;