RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB43370" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB43370 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2610081 2610081 PRJEB43370_P_NODE_10283_length_163_cov_0.912281_g10240_i0 PRJEB43370 10283 163 0.912281 1.48701803 Vannella sp. strain W181G/I 325084 Discosea other_Eukaryota 84.2 4.82e-12   NTclustered gi|62865938|gb|AY929913.1| 325084 g10240 i0 93.103 29.9570552147239 58 3 36 1 106 163 1357 1301 Vannella sp. strain W181G/I 18S small subunit ribosomal RNA gene, partial sequence blastn 4883 84.2 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain W181G/I
2610133 2610133 PRJEB43370_P_NODE_4843_length_205_cov_1.115385_g4800_i0 PRJEB43370 4843 205 1.115385 2.28653925 Ripella sp. PS2 1217116 Discosea other_Eukaryota 379 7.229999999999999e-101   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g4800 i0 100 100.019512195122 205 0 100 0 1 205 566 770 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 20504 379 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
2610135 2610135 PRJEB43370_P_NODE_4963_length_203_cov_1.012987_g4920_i0 PRJEB43370 4963 203 1.012987 2.05636361 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 126 1.03e-24   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g4920 i0 87.273 0.541871921182266 110 14 54 0 78 187 122 13 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 110 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12469016 12469016 PRJEB43370_P_NODE_890_length_461_cov_3.279126_g847_i0 PRJEB43370 890 461 3.279126 15.11677086 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 542 2.18e-149   NTclustered gi|33946348|gb|AY294153.1| 197527 g847 i0 87.852 97.529284164859 461 56 100 0 1 461 1053 593 Platyamoeba placida actin mRNA, partial cds blastn 44961 542 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
24286002 24286002 PRJEB43370_P_NODE_340_length_713_cov_5.141566_g301_i0 PRJEB43370 340 713 5.141566 36.65936558 Platyamoeba placida 3454475 Discosea other_Eukaryota 880 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g301 i0 91.331 96.6521739130435 646 52 90 3 2 645 539 1182 Platyamoeba placida actin mRNA, partial cds blastn 68913 880 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
24286037 24286037 PRJEB43370_P_NODE_6900_length_174_cov_2.704000_g6857_i0 PRJEB43370 6900 174 2.704 4.70496 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 219 1.3599999999999996e-52   NTclustered gi|33946346|gb|AY294152.1| 242541 g6857 i0 91.72 77.7528735632184 157 13 90 0 16 172 39 195 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 13529 219 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;