RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB43370" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB43370 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
60181 60181 PRJEB43370_P_NODE_1661_length_341_cov_1.746575_g1618_i0 PRJEB43370 1661 341 1.746575 5.95582075 Synchytrium microbalum 1806994 Fungi Fungi 292 1.74e-74   NTclustered gi|1759154564|ref|XM_031169821.1| 1806994 g1618 i0 85.612 68.0117302052786 278 40 82 0 51 328 7 284 Synchytrium microbalum uncharacterized protein (SmJEL517_g03893), partial mRNA blastn 23192 292 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
1334554 1334554 PRJEB43370_P_NODE_6782_length_176_cov_1.637795_g6739_i0 PRJEB43370 6782 176 1.637795 2.8825192 Rodmanochytrium sp. 2750701 Fungi Fungi 128 2.4e-25   NTclustered gi|1866582804|gb|MT730979.1| 2750701 g6739 i0 81.356 45.8579545454545 177 16 99 6 1 175 4012 3851 Rodmanochytrium sp. isolate UM1564 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8071 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rodmanochytrium Rodmanochytrium sp.
10262996 10262996 PRJEB43370_P_NODE_3269_length_241_cov_3.239583_g3226_i0 PRJEB43370 3269 241 3.239583 7.80739503 Fimicolochytrium jonesii 1396493 Fungi Fungi 204 5.66e-48   NTclustered gi|2432049332|ref|XM_053065092.1| 1396493 g3226 i0 89.873 70.2738589211618 158 16 66 0 40 197 281 124 Fimicolochytrium jonesii ribosomal protein L18e/L15P (EV422DRAFT_17183), mRNA blastn 16936 204 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
15017765 15017765 PRJEB43370_P_NODE_5172_length_199_cov_1.380000_g5129_i0 PRJEB43370 5172 199 1.38 2.7462 Eukaryota 2759 Fungi Fungi 195 2.71e-45   NTclustered gi|311235598|ref|NG_027613.1| 110093 g5129 i0 95.122 71.9949748743719 123 6 62 0 4 126 2725 2847 Polychytrium aggregatum JEL 109 28S rRNA gene, partial sequence; from reference material blastn 14327 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20461058 20461058 PRJEB43370_P_NODE_6617_length_178_cov_1.635659_g6574_i0 PRJEB43370 6617 178 1.635659 2.91147302 Synchytrium sp. 1971732 Fungi Fungi 104 4.1e-18   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g6574 i0 78.981 0.882022471910112 157 29 88 4 23 178 906 1059 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 157 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
24285973 24285973 PRJEB43370_P_NODE_10680_length_162_cov_0.920354_g10637_i0 PRJEB43370 10680 162 0.920354 1.49097348 Spizellomyces punctatus 109760 Fungi Fungi 137 3.6199999999999997e-28   NTclustered gi|1026973001|ref|XM_016751749.1| 645134 g10637 i0 86.4 45.0617283950617 125 17 77 0 38 162 807 683 Spizellomyces punctatus DAOM BR117 60S ribosomal protein L8 (SPPG_03486), mRNA blastn 7300 137 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;