RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB43370" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 5 ✖

tax_clade 1

bioproject 1

  • PRJEB43370 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2610105 2610105 PRJEB43370_P_NODE_2683_length_264_cov_1.539535_g2640_i0 PRJEB43370 2683 264 1.539535 4.0643724 Plasmodium berghei 5821 SAR_Eukaryotes SAR_Eukaryotes 278 3.65e-70   NTclustered gi|1843568304|ref|XM_034563737.1| 5823 g2640 i0 85.714 153.037878787879 266 34 100 4 1 264 187 450 Plasmodium berghei ANKA polyubiquitin, putative (PBANKA_0610300), partial mRNA blastn 40402 278 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
3886276 3886276 PRJEB43370_P_NODE_10304_length_163_cov_0.912281_g10261_i0 PRJEB43370 10304 163 0.912281 1.48701803 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 110 7.95e-20   NTclustered gi|921131779|ref|XM_013584971.1| 51315 g10261 i0 85.714 4.04294478527607 105 13 64 2 42 145 275 172 Eimeria necatrix ribosomal protein L11, putative partial mRNA blastn 659 110 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
10262967 10262967 PRJEB43370_P_NODE_10489_length_163_cov_0.912281_g10446_i0 PRJEB43370 10489 163 0.912281 1.48701803 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|916502172|ref|XM_013496445.1| 44415 g10446 i0 100 0.171779141104294 28 0 17 0 45 72 2533 2506 Eimeria mitis Retrotransposon nucleocapsid protein, related (EMH_0048750), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
22666823 22666823 PRJEB43370_P_NODE_3678_length_229_cov_1.683333_g3635_i0 PRJEB43370 3678 229 1.683333 3.85483257 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 198 2.48e-46   NTclustered gi|1270520602|ref|XM_022956109.1| 5861 g3635 i0 86.264 49.235807860262 182 25 79 0 4 185 182 1 Plasmodium yoelii histone H4, putative (PY17X_0944400), partial mRNA blastn 11275 198 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
24286045 24286045 PRJEB43370_P_NODE_800_length_488_cov_3.353075_g757_i0 PRJEB43370 800 488 3.353075 16.363006 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 243 2.63e-59   NTclustered gi|82704923|ref|XM_721661.1| 5861 g757 i0 76.782 6.17008196721311 435 99 89 2 55 488 51 484 Plasmodium yoelii heat shock protein 70, putative (PY17X_0712100), partial mRNA blastn 3011 243 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;