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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJEB43370" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJEB43370 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1334563 1334563 PRJEB43370_P_NODE_8222_length_168_cov_0.873950_g8179_i0 PRJEB43370 8222 168 0.87395 1.468236 Monoraphidium neglectum 145388 Plants Plants 185 1.33e-42   NTclustered gi|926786575|ref|XM_014046308.1| 145388 g8179 i0 87.117 19.827380952381 163 21 97 0 1 163 966 1128 Monoraphidium neglectum elongation factor EF-1 alpha subunit mRNA blastn 3331 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
3540444 3540444 PRJEB43370_P_NODE_1563_length_350_cov_3.212625_g1520_i0 PRJEB43370 1563 350 3.212625 11.2441875 Bryopsis 3128 Plants Plants 387 7.98e-103   NTclustered gi|969822372|gb|KT950953.1| 3129 g1520 i0 86.571 99.4142857142857 350 47 100 0 1 350 345 694 Bryopsis maxima actin gene, partial cds blastn 34795 387 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
3886302 3886302 PRJEB43370_P_NODE_2584_length_269_cov_1.886364_g2541_i0 PRJEB43370 2584 269 1.886364 5.07431916 Ignatius tetrasporus 231078 Plants Plants 135 2.38e-27   NTclustered gi|371782089|emb|HE610121.1| 231078 g2541 i0 89.189 37.9739776951673 111 8 41 4 1 109 3186 3078 Ignatius tetrasporus 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2012 blastn 10215 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ignatiales Ignatiaceae Ignatius Ignatius tetrasporus
3886325 3886325 PRJEB43370_P_NODE_524_length_599_cov_1.760000_g482_i0 PRJEB43370 524 599 1.76 10.5424 Nannochloris sp. 'desiccata' 1650286 Plants Plants 420 1.4099999999999995e-112   NTclustered gi|2175794227|gb|OK569792.1| 1650286 g482 i0 79.639 75.7529215358932 609 104 100 17 1 599 2559 3157 Chlorella desiccata (nom. nud.) mitochondrion, complete genome blastn 45376 420 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
4817799 4817799 PRJEB43370_P_NODE_5104_length_200_cov_1.377483_g5061_i0 PRJEB43370 5104 200 1.377483 2.754966 Eukaryota 2759 Plants Plants 122 1.3099999999999999e-23   NTclustered gi|926770371|ref|XM_014038206.1| 145388 g5061 i0 87.037 22.57 108 14 54 0 10 117 153 46 Monoraphidium neglectum solute carrier family 25 partial mRNA blastn 4514 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
5162533 5162533 PRJEB43370_P_NODE_5285_length_197_cov_1.405405_g5242_i0 PRJEB43370 5285 197 1.405405 2.76864785 Volvox carteri 3067 Plants Plants 150 5.88e-32   NTclustered gi|302852142|ref|XM_002957547.1| 3068 g5242 i0 81.421 84.5482233502538 183 34 93 0 1 183 319 501 Volvox carteri f. nagariensis isocitrate dehydrogenase, NADP-dependent, mitochondrial (idh3), mRNA blastn 16656 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
15362446 15362446 PRJEB43370_P_NODE_9553_length_165_cov_0.896552_g9510_i0 PRJEB43370 9553 165 0.896552 1.4793108 Chlorella variabilis 554065 Plants Plants 54.7 0.004   NTclustered gi|552840797|ref|XM_005850082.1| 554065 g9510 i0 100 0.175757575757576 29 0 18 0 46 74 255 283 Chlorella variabilis hypothetical protein (CHLNCDRAFT_142266) mRNA, complete cds blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
24286046 24286046 PRJEB43370_P_NODE_8020_length_168_cov_0.873950_g7977_i0 PRJEB43370 8020 168 0.87395 1.468236 Chlamydomonas reinhardtii 3055 Plants Plants 100 4.97e-17   NTclustered gi|2082247485|ref|XM_001696149.2| 3055 g7977 i0 78.808 0.898809523809524 151 30 89 2 19 168 339 190 Chlamydomonas reinhardtii ribosomal protein S8 (CHLRE_06g272800v5), mRNA blastn 151 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;