RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB43370" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB43370 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6438384 6438384 PRJEB43370_P_NODE_7566_length_169_cov_0.866667_g7523_i0 PRJEB43370 7566 169 0.866667 1.46466723 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 187 3.71e-43   NTclustered gi|2874253811|emb|OY969795.1| 464461 g7523 i0 86.857 134.526627218935 175 13 100 7 1 169 2059568 2059398 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 22735 187 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
7712599 7712599 PRJEB43370_P_NODE_4847_length_205_cov_1.000000_g4804_i0 PRJEB43370 4847 205 1 2.05 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 121 4.839999999999999e-23   NTclustered gi|2874253952|emb|OY970277.1| 412056 g4804 i0 77.941 30.380487804878 204 37 98 8 1 200 3078687 3078886 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 6228 121 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23012187 23012187 PRJEB43370_P_NODE_7539_length_169_cov_0.866667_g7496_i0 PRJEB43370 7539 169 0.866667 1.46466723 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 257 2.79e-64   NTclustered gi|971146634|emb|LN879502.1| 389348 g7496 i0 94.083 25.7751479289941 169 10 100 0 1 169 1250508 1250676 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 4356 257 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;