RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB41113" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB41113 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15017678 15017678 PRJEB41113_S_NODE_11812_length_155_cov_1.974576_g11803_i0 PRJEB41113 11812 155 1.974576 3.0605928 Treponema 157 Bacteria Bacteria 237 3.2800000000000004e-58   NTclustered gi|2265113193|gb|CP051148.1| 69710 g11803 i0 96.528 3.69032258064516 144 4 93 1 1 144 617653 617511 Treponema vincentii strain OMZ 861 chromosome, complete genome blastn 572 237 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
16635950 16635950 PRJEB41113_S_NODE_4254_length_192_cov_8.851613_g4245_i0 PRJEB41113 4254 192 8.851613 16.99509696 Treponema sp. OMZ 803 120682 Bacteria Bacteria 353 4.05e-93   NTclustered gi|2265127813|gb|CP051195.1| 120682 g4245 i0 100 27.359375 191 0 99 0 2 192 1419931 1419741 Treponema sp. OMZ 803 strain BF2M chromosome, complete genome blastn 5253 353 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 803
21391954 21391954 PRJEB41113_S_NODE_6037_length_181_cov_1.076389_g6028_i0 PRJEB41113 6037 181 1.076389 1.94826409 Treponema 157 Bacteria Bacteria 335 1.36e-87   NTclustered gi|1996296230|gb|CP031393.1| 58231 g6028 i0 100 11.9281767955801 181 0 100 0 1 181 94711 94531 Treponema medium strain ATCC 700293 chromosome, complete genome blastn 2159 335 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema medium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;