RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB41113" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB41113 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6092981 6092981 PRJEB41113_S_NODE_1765_length_232_cov_126.517949_g1756_i0 PRJEB41113 1765 232 126.517949 293.52164168 Truepera 332248 Bacteria Bacteria 298 2.41e-76   NTclustered gi|470486385|ref|NR_076754.1| 332249 g1756 i0 93.103 402.39224137931 203 14 88 0 30 232 214 12 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 93355 298 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
19184635 19184635 PRJEB41113_S_NODE_2636_length_213_cov_4.090909_g2627_i0 PRJEB41113 2636 213 4.090909 8.71363617 Deinococcus sp. AB2017081 3093660 Bacteria Bacteria 156 1.39e-33   NTclustered gi|2636768990|gb|CP140098.1| 3093660 g2627 i0 83.041 5.50234741784038 171 29 80 0 37 207 1409347 1409517 Deinococcus sp. AB2017081 chromosome, complete genome blastn 1172 156 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. AB2017081
20459981 20459981 PRJEB41113_S_NODE_3057_length_207_cov_1.876471_g3048_i0 PRJEB41113 3057 207 1.876471 3.88429497 Deinococcus koreensis 2054903 Bacteria Bacteria 372 1.2199999999999997e-98   NTclustered gi|1232994349|gb|MF669554.1| 2054903 g3048 i0 99.034 115.217391304348 207 2 100 0 1 207 410 204 Deinococcus koreensis strain SJW1-2 16S ribosomal RNA gene, partial sequence blastn 23850 372 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus koreensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;