RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB39643" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB39643 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22666438 22666438 PRJEB39643_P_NODE_71898_length_275_cov_1.524752_g71705_i0 PRJEB39643 71898 275 1.524752 4.193068 root 1 Root_unresolved Root_unresolved 52.8 0.025   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g71705 i0 100 0.203636363636364 28 0 10 0 1 28 5267480 5267507 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 56 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
23010374 23010374 PRJEB39643_P_NODE_74519_length_273_cov_1.540000_g74326_i0 PRJEB39643 74519 273 1.54 4.2042 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 329 1.0299999999999998e-85   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g74326 i0 89.313 50.0586080586081 262 28 96 0 9 270 4710421 4710682 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 13666 329 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;