RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB39643" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB39643 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2608342 2608342 PRJEB39643_P_NODE_82423_length_269_cov_3.500000_g82230_i0 PRJEB39643 82423 269 3.5 9.415 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 54.7 0.007   NTclustered gi|2318767725|ref|XM_051215408.1| 6185 g82230 i0 100 0.107806691449814 29 0 11 0 60 88 145 173 Schistosoma haematobium Transcription elongation factor SPT5 (SUPT5H), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
7710127 7710127 PRJEB39643_P_NODE_16067_length_460_cov_1.591731_g15875_i0 PRJEB39643 16067 460 1.591731 7.3219626 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 54.7 0.012   NTclustered gi|1084296938|ref|XM_018799815.1| 6183 g15875 i0 96.875 0.0695652173913043 32 1 7 0 257 288 3489 3458 Schistosoma mansoni putative na+/k+ atpase alpha subunit partial mRNA blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
10260346 10260346 PRJEB39643_P_NODE_14229_length_496_cov_3.638298_g14038_i0 PRJEB39643 14229 496 3.638298 18.04595808 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.048   NTclustered gi|690476386|emb|LN017327.1| 99802 g14038 i0 100 0.112903225806452 28 0 6 0 408 435 7563 7536 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0017075 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
12811033 12811033 PRJEB39643_P_NODE_139811_length_245_cov_0.895349_g139618_i0 PRJEB39643 139811 245 0.895349 2.19360505 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.022   NTclustered gi|690470369|emb|LN009608.1| 99802 g139618 i0 100 0.114285714285714 28 0 11 0 28 55 8530 8557 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0009499 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;