RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJEB39643" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB39643 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2607578 2607578 PRJEB39643_P_NODE_155843_length_226_cov_2.411765_g155649_i0 PRJEB39643 155843 226 2.411765 5.4505889 Strongyloides ratti 34506 Nematoda Nematoda 54.7 0.006   NTclustered gi|1376137057|ref|XM_024648649.1| 34506 g155649 i0 100 0.128318584070796 29 0 13 0 5 33 1483 1511 Strongyloides ratti Matrilin-2 (SRAE_1000166600), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
6435735 6435735 PRJEB39643_P_NODE_14226_length_496_cov_3.810875_g14035_i0 PRJEB39643 14226 496 3.810875 18.90194 Brugia malayi 6279 Nematoda Nematoda 56.5 0.004   NTclustered gi|2082273863|ref|XM_043076275.1| 6279 g14035 i0 97.059 0.137096774193548 34 0 7 1 14 46 46 13 Brugia malayi Uncharacterized protein (Bma-lgc-37), partial mRNA blastn 68 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
7710452 7710452 PRJEB39643_P_NODE_4107_length_1026_cov_7.161595_g3995_i0 PRJEB39643 4107 1026 7.161595 73.4779647 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.008   NTclustered gi|687022647|emb|LM525561.1| 174720 g3995 i0 96.97 0.0321637426900585 33 1 3 0 967 999 236856 236824 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000006 blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
11536082 11536082 PRJEB39643_P_NODE_27130_length_352_cov_1.781362_g26937_i0 PRJEB39643 27130 352 1.781362 6.27039424 Rotylenchulus reniformis 239373 Nematoda Nematoda 52.8 0.033   NTclustered gi|320577020|gb|HQ158017.1| 239373 g26937 i0 100 0.159090909090909 28 0 8 0 223 250 178 205 Rotylenchulus reniformis microsatellite RR4-4 sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Rotylenchulus Rotylenchulus reniformis
12811464 12811464 PRJEB39643_P_NODE_34551_length_316_cov_4.662551_g34358_i0 PRJEB39643 34551 316 4.662551 14.73366116 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.03   NTclustered gi|687022669|emb|LM525583.1| 174720 g34358 i0 100 0.0886075949367089 28 0 9 0 143 170 131273 131300 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000021 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14085883 14085883 PRJEB39643_P_NODE_147952_length_242_cov_0.911243_g147759_i0 PRJEB39643 147952 242 0.911243 2.20520806 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.022   NTclustered gi|413001960|emb|Z69635.2| 6239 g147759 i0 96.875 0.264462809917355 32 0 13 1 88 119 1288 1258 Caenorhabditis elegans Cosmid F19B6, complete sequence blastn 64 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15359853 15359853 PRJEB39643_P_NODE_15693_length_466_cov_27.498728_g15501_i0 PRJEB39643 15693 466 27.498728 128.14407248 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.045   NTclustered gi|687022641|emb|LM525555.1| 174720 g15501 i0 100 0.0600858369098712 28 0 6 0 270 297 1143453 1143426 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000001 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16634713 16634713 PRJEB39643_P_NODE_2994_length_1173_cov_13.704545_g2898_i0 PRJEB39643 2994 1173 13.704545 160.75431285 Strongyloides papillosus 174720 Nematoda Nematoda 60.2 7.15e-4   NTclustered gi|687022727|emb|LM525641.1| 174720 g2898 i0 100 0.0272804774083546 32 0 3 0 353 384 87331 87300 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000049 blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
21735010 21735010 PRJEB39643_P_NODE_65118_length_278_cov_1.502439_g64925_i0 PRJEB39643 65118 278 1.502439 4.17678042 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.026   NTclustered gi|687865918|emb|LK927922.1| 6239 g64925 i0 100 0.201438848920863 28 0 10 0 251 278 13659 13686 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000340 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;