RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJEB39643" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 15 ✖

tax_clade 1

bioproject 1

  • PRJEB39643 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
57426 57426 PRJEB39643_P_NODE_129141_length_248_cov_3.497143_g128948_i0 PRJEB39643 129141 248 3.497143 8.67291464 Plasmodium vivax 5855 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|156100080|ref|XM_001615718.1| 5855 g128948 i0 100 0.342741935483871 29 0 12 0 118 146 5361 5333 Plasmodium vivax hypothetical protein (PVX_117365), partial mRNA blastn 85 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax
57905 57905 PRJEB39643_P_NODE_30781_length_333_cov_1.538462_g30588_i0 PRJEB39643 30781 333 1.538462 5.12307846 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.031   NTclustered gi|1620115710|ref|XM_028670933.1| 5849 g30588 i0 100 0.0840840840840841 28 0 8 0 156 183 2647 2674 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00221800), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
1332455 1332455 PRJEB39643_P_NODE_51302_length_285_cov_1.481132_g51109_i0 PRJEB39643 51302 285 1.481132 4.2212262 Cryptosporidium andersoni 117008 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|2785769902|ref|XM_067214076.1| 117008 g51109 i0 100 0.0982456140350877 28 0 10 0 204 231 347 374 Cryptosporidium andersoni HECT domain-containing family protein (cand_038530), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium andersoni
2264692 2264692 PRJEB39643_P_NODE_155542_length_227_cov_2.071429_g155349_i0 PRJEB39643 155542 227 2.071429 4.70214383 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.02   NTclustered gi|1620138154|ref|XM_028679820.1| 85471 g155349 i0 100 0.246696035242291 28 0 12 0 4 31 1789 1816 Plasmodium relictum conserved Plasmodium protein, unknown function (PRELSG_0204000), partial mRNA blastn 56 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
2607099 2607099 PRJEB39643_P_NODE_10783_length_594_cov_1.401152_g10599_i0 PRJEB39643 10783 594 1.401152 8.32284288 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.016   NTclustered gi|820690829|tpe|LN714482.1| 572307 g10599 i0 94.444 0.0606060606060606 36 1 6 1 279 314 331840 331874 TPA_asm: Neospora caninum Liverpool, chromosome chrVIIb, complete genome blastn 36 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
8985661 8985661 PRJEB39643_P_NODE_9288_length_652_cov_2.371330_g9109_i0 PRJEB39643 9288 652 2.37133 15.4610716 Babesia microti 5868 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.018   NTclustered gi|829087214|ref|XM_012794568.1| 1133968 g9109 i0 94.444 0.0552147239263804 36 1 6 1 104 139 43 9 Babesia microti strain RI hypothetical protein partial mRNA blastn 36 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti
10260586 10260586 PRJEB39643_P_NODE_17469_length_438_cov_1.950685_g17276_i0 PRJEB39643 17469 438 1.950685 8.5440003 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.012   NTclustered gi|1620153122|ref|XM_028676834.1| 85471 g17276 i0 100 0.0662100456621005 29 0 7 0 145 173 3621 3649 Plasmodium relictum conserved Plasmodium protein, unknown function (PRELSG_0007300), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
11192700 11192700 PRJEB39643_P_NODE_13169_length_522_cov_1.948775_g12979_i0 PRJEB39643 13169 522 1.948775 10.1726055 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.004   NTclustered gi|915126982|ref|XM_013479002.1| 5804 g12979 i0 92.5 0.764367816091954 40 1 7 2 47 85 756 794 Eimeria maxima nuclear DNA-binding protein, putative partial mRNA blastn 399 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
12811292 12811292 PRJEB39643_P_NODE_20491_length_402_cov_5.258359_g20298_i0 PRJEB39643 20491 402 5.258359 21.13860318 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 148 4.779999999999999e-31   NTclustered gi|915129092|ref|XM_013479536.1| 5804 g20298 i0 78.899 5.73134328358209 218 46 54 0 150 367 1167 950 Eimeria maxima ATP-dependent helicase, putaive, putative partial mRNA blastn 2304 148 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
15359749 15359749 PRJEB39643_P_NODE_14813_length_484_cov_3.111922_g14622_i0 PRJEB39643 14813 484 3.111922 15.06170248 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.047   NTclustered gi|749157464|ref|XM_011132059.1| 110365 g14622 i0 100 0.0578512396694215 28 0 6 0 331 358 305 332 Gregarina niphandrodes hypothetical protein mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
15360758 15360758 PRJEB39643_P_NODE_92833_length_264_cov_15.083770_g92640_i0 PRJEB39643 92833 264 15.08377 39.8211528 Theileria bicornis 191824 SAR_Eukaryotes SAR_Eukaryotes 488 1.5499999999999999e-133   NTclustered gi|1893910248|gb|MT903292.1| 191824 g92640 i0 100 100.265151515152 264 0 100 0 1 264 557 820 Theileria bicornis clone 343/3 small subunit ribosomal RNA gene, partial sequence blastn 26470 488 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria bicornis
16635118 16635118 PRJEB39643_P_NODE_6654_length_802_cov_4.916324_g6500_i0 PRJEB39643 6654 802 4.916324 39.42891848 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 100 2.84e-16   NTclustered gi|6138832|emb|AJ133813.1| 36329 g6500 i0 82.883 1.13965087281796 111 19 14 0 692 802 1617 1507 Plasmodium falciparum pub gene, exons 1-2 blastn 914 100 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
19182690 19182690 PRJEB39643_P_NODE_10796_length_593_cov_3.326923_g10612_i0 PRJEB39643 10796 593 3.326923 19.72865339 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 58.4 0.001   NTclustered gi|1620148755|ref|XM_028678304.1| 85471 g10612 i0 92.683 0.0691399662731872 41 2 7 1 381 421 5799 5760 Plasmodium relictum conserved Plasmodium membrane protein, unknown function (PRELSG_1249500), partial mRNA blastn 41 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
19183760 19183760 PRJEB39643_P_NODE_6056_length_846_cov_3.447607_g5908_i0 PRJEB39643 6056 846 3.447607 29.16675522 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 195 1.34e-44   NTclustered gi|1620947804|ref|XM_028685967.1| 77519 g5908 i0 79.322 0.348699763593381 295 48 34 13 557 845 2313 2026 Plasmodium gonderi hypothetical protein, conserved (PGO_021490), partial mRNA blastn 295 195 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi
25215722 25215722 PRJEB39643_P_NODE_97180_length_262_cov_3.185185_g96987_i0 PRJEB39643 97180 262 3.185185 8.3451847 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.14e-4   NTclustered gi|1843568146|ref|XM_034568545.1| 5823 g96987 i0 97.059 0.259541984732824 34 1 13 0 129 162 2591 2558 Plasmodium berghei ANKA major facilitator superfamily domain-containing protein, putative (PBANKA_0602400), partial mRNA blastn 68 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;