RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB39643" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB39643 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17909042 17909042 PRJEB39643_P_NODE_134395_length_247_cov_0.885057_g134202_i0 PRJEB39643 134395 247 0.885057 2.18609079 Sulfidibacter corallicola 2818388 Bacteria Bacteria 54.7 0.006   NTclustered gi|2013124720|gb|CP071793.1| 2818388 g134202 i0 100 0.117408906882591 29 0 12 0 97 125 10145745 10145773 Sulfidibacter corallicola strain M133 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Acanthopleuribacterales Acanthopleuribacteraceae Sulfidibacter Sulfidibacter corallicola
24284321 24284321 PRJEB39643_P_NODE_87020_length_267_cov_1.587629_g86827_i0 PRJEB39643 87020 267 1.587629 4.23896943 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 58.4 5.25e-4   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g86827 i0 100 0.116104868913858 31 0 12 0 237 267 4618621 4618591 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 31 58.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;