RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB39643" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 6 ✖

bioproject 1

  • PRJEB39643 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
57809 57809 PRJEB39643_P_NODE_21081_length_396_cov_3.102167_g20888_i0 PRJEB39643 21081 396 3.102167 12.28458132 Gammaretrovirus murleu 3428959 Viruses Viruses 593 5.019999999999998e-165   NTclustered gi|1167936838|gb|KY574516.1| 11786 g20888 i0 93.687 93.7373737373737 396 25 100 0 1 396 7598 7203 Murine leukemia virus isolate M965-Akv1-MCF, complete genome blastn 37120 593 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3883961 3883961 PRJEB39643_P_NODE_25004_length_365_cov_3.061644_g24811_i0 PRJEB39643 25004 365 3.061644 11.1750006 Lentivirus humimdef1 3418650 Viruses Viruses 58.4 7.45e-4   NTclustered gi|295243431|gb|GU730481.1| 11676 g24811 i0 100 0.457534246575342 31 0 8 0 258 288 116 86 HIV-1 isolate A3546TOB8U from USA vpu protein (vpu) gene, partial cds blastn 167 58.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
8985308 8985308 PRJEB39643_P_NODE_5648_length_878_cov_4.530435_g5508_i0 PRJEB39643 5648 878 4.530435 39.7772193 Gammaretrovirus murleu 3428959 Viruses Viruses 1371 0   NTclustered gi|13940446|gb|U43202.1|MLU43202 11786 g5508 i0 95.46 79.5842824601367 859 39 98 0 1 859 6893 7751 RFP provirus of Murine leukemia virus gag precursor protein, pol precursor protein, env precursor protein genes, complete cds blastn 69875 1371 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15017220 15017220 PRJEB39643_P_NODE_158552_length_215_cov_1303.690141_g158358_i0 PRJEB39643 158552 215 1303.690141 2802.93380315 root 1 Root_unresolved Root_unresolved 327 2.81e-85   NTclustered gi|198076000|gb|EU908835.1| 10407 g158358 i0 100 82.2558139534884 177 0 82 0 22 198 378 202 Hepatitis B virus isolate HBVDP92 polymerase (P) and large S protein genes, partial cds; and middle S protein (S) and S protein (S) genes, complete cds blastn 17685 327 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Blubervirales Hepadnaviridae Orthohepadnavirus Orthohepadnavirus hominoidei
21734069 21734069 PRJEB39643_P_NODE_123798_length_250_cov_3.305085_g123605_i0 PRJEB39643 123798 250 3.305085 8.2627125 Lentivirus humimdef2 3418651 Viruses Viruses 86.1 2.23e-12   NTclustered gi|1112944873|gb|KY025538.1| 11709 g123605 i0 86.42 1.176 81 7 32 4 168 247 1672 1595 HIV-2 isolate LA37 from Senegal, complete genome blastn 294 86.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef2
21734832 21734832 PRJEB39643_P_NODE_4818_length_951_cov_5.567198_g4692_i0 PRJEB39643 4818 951 5.567198 52.94405298 Gammaretrovirus murleu 3428959 Viruses Viruses 1448 0   NTclustered gi|1071348744|gb|KX173421.1| 11786 g4692 i0 94.211 92.5488958990536 950 53 99 2 1 949 1829 2777 Murine leukemia virus clone 26, complete sequence blastn 88014 1448 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;