RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB39643" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJEB39643 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2607490 2607490 PRJEB39643_P_NODE_148563_length_241_cov_1.833333_g148370_i0 PRJEB39643 148563 241 1.833333 4.41833253 Chloroidium ellipsoideum 63676 Plants Plants 222 1.56e-53   NTclustered gi|1169296931|gb|KY364701.1| 63676 g148370 i0 83.673 11.746887966805 245 31 100 8 1 241 5692 5453 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 2831 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
5159983 5159983 PRJEB39643_P_NODE_154525_length_230_cov_2.050955_g154332_i0 PRJEB39643 154525 230 2.050955 4.7171965 Corbierea radiosa 51318 Plants Plants 320 5.1e-83   NTclustered gi|2500263792|gb|MZ133461.1| 51318 g154332 i0 96.392 83.1739130434783 194 7 84 0 1 194 195 2 Corbierea radiosa PsbA (psbA) gene, partial cds; chloroplast blastn 19130 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Corbierea Corbierea radiosa
5160261 5160261 PRJEB39643_P_NODE_34065_length_318_cov_3.522449_g33872_i0 PRJEB39643 34065 318 3.522449 11.20138782 Cephaleuros diffusus 1519597 Plants Plants 56.5 0.002   NTclustered gi|2692956661|ref|NC_086864.1| 1519597 g33872 i0 100 0.182389937106918 30 0 9 0 267 296 54949 54978 Cephaleuros diffusus chloroplast, complete genome blastn 58 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros diffusus
10260936 10260936 PRJEB39643_P_NODE_4749_length_958_cov_14.088136_g4624_i0 PRJEB39643 4749 958 14.088136 134.96434288 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 584 7.729999999999998e-162   NTclustered gi|635557418|emb|FN984964.1| 37502 g4624 i0 78.587 93.6242171189979 906 178 94 14 6 903 67 964 Polytomella sp. Pringsheim 198.80 mRNA for mitochondrial ADP/ATP translocator protein (ant1 gene) blastn 89692 584 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
11535330 11535330 PRJEB39643_P_NODE_102090_length_260_cov_1.647059_g101897_i0 PRJEB39643 102090 260 1.647059 4.2823534 Protosiphon botryoides 44656 Plants Plants 167 8.109999999999999e-37   NTclustered gi|1215858775|gb|KT693220.1| 44656 g101897 i0 82 71.0961538461538 200 32 76 4 3 200 424 621 Protosiphon botryoides strain UTEX B99 ATP synthase CF1 beta subunit (atpB) gene, complete cds; chloroplast blastn 18485 167 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Protosiphonaceae Protosiphon Protosiphon botryoides
14085982 14085982 PRJEB39643_P_NODE_156152_length_226_cov_2.013072_g155958_i0 PRJEB39643 156152 226 2.013072 4.54954272 Auxenochlorella protothecoides 3075 Plants Plants 147 8.97e-31   NTclustered gi|760450068|ref|XM_011403801.1| 3075 g155958 i0 81.818 50.1017699115044 187 23 82 5 41 226 410 234 Auxenochlorella protothecoides Peptidyl-prolyl cis-trans isomerase CYP18-4 partial mRNA blastn 11323 147 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
21734665 21734665 PRJEB39643_P_NODE_33978_length_319_cov_1.780488_g33785_i0 PRJEB39643 33978 319 1.780488 5.67975672 Chlorella variabilis 554065 Plants Plants 117 1.05e-21   NTclustered gi|552822108|ref|XM_005845964.1| 554065 g33785 i0 81.884 6.51097178683386 138 25 43 0 1 138 290 427 Chlorella variabilis hypothetical protein (CHLNCDRAFT_53431) mRNA, complete cds blastn 2077 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;