contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJEB39269" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3883184 | 3883184 | PRJEB39269_P_NODE_48184_length_197_cov_4.537975_g47779_i0 | PRJEB39269 | 48184 | 197 | 4.537975 | 8.93981075 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 244 | 2.62e-60 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g47779 | i0 | 89.109 | 364.142131979695 | 202 | 14 | 100 | 8 | 1 | 197 | 3893718 | 3893520 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 71736 | 244 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 5159374 | 5159374 | PRJEB39269_P_NODE_26205_length_272_cov_2.828326_g25800_i0 | PRJEB39269 | 26205 | 272 | 2.828326 | 7.69304672 | Nibricoccus aquaticus | 2576891 | Bacteria | Bacteria | 472 | 1.62e-128 | NTclustered | gi|1243404978|gb|CP023344.1| | 2576891 | g25800 | i0 | 98.864 | 103.330882352941 | 264 | 3 | 97 | 0 | 7 | 270 | 2497158 | 2497421 | Nibricoccus aquaticus strain HZ-65 chromosome, complete genome | blastn | 28106 | 472 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Nibricoccus | Nibricoccus aquaticus | |
| 6435273 | 6435273 | PRJEB39269_P_NODE_58286_length_180_cov_5.007092_g57881_i0 | PRJEB39269 | 58286 | 180 | 5.007092 | 9.0127656 | Chthoniobacter flavus | 191863 | Bacteria | Bacteria | 302 | 1.37e-77 | NTclustered | gi|183579828|emb|AM905425.1| | 497964 | g57881 | i0 | 97.714 | 230.138888888889 | 175 | 4 | 97 | 0 | 4 | 178 | 2090 | 1916 | Chthoniobacter flavus 23S rRNA gene, strain Ellin428 | blastn | 41425 | 302 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacter | Chthoniobacter flavus | |
| 7709420 | 7709420 | PRJEB39269_P_NODE_20727_length_308_cov_2.185874_g20322_i0 | PRJEB39269 | 20727 | 308 | 2.185874 | 6.73249192 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 375 | 1.5e-99 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g20322 | i0 | 88.71 | 241.853896103896 | 310 | 31 | 100 | 3 | 1 | 308 | 2036 | 2343 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 74491 | 375 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 9917425 | 9917425 | PRJEB39269_P_NODE_55688_length_184_cov_2.262069_g55283_i0 | PRJEB39269 | 55688 | 184 | 2.262069 | 4.16220696 | Verrucomicrobiota | 74201 | Bacteria | Bacteria | 340 | 2.99e-89 | NTclustered | gi|164510706|emb|AJ966885.1| | 134634 | g55283 | i0 | 100 | 45.7065217391304 | 184 | 0 | 100 | 0 | 1 | 184 | 3347 | 3164 | Opitutus sp. VeGlc2 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 11246 | blastn | 8410 | 340 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. VeGlc2 | |
| 15359289 | 15359289 | PRJEB39269_P_NODE_90493_length_151_cov_1.044643_g90088_i0 | PRJEB39269 | 90493 | 151 | 1.044643 | 1.57741093 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 222 | 8.879999999999998e-54 | NTclustered | gi|2916415364|gb|CP170459.1| | 2026799 | g90088 | i0 | 95.035 | 41.0529801324503 | 141 | 7 | 93 | 0 | 11 | 151 | 2577522 | 2577382 | MAG: Verrucomicrobiota bacterium isolate tig00002468 chromosome, complete genome | blastn | 6199 | 222 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 16633912 | 16633912 | PRJEB39269_P_NODE_51354_length_191_cov_6.743421_g50949_i0 | PRJEB39269 | 51354 | 191 | 6.743421 | 12.87993411 | Lacunisphaera limnophila | 1838286 | Bacteria | Bacteria | 281 | 1.92e-71 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g50949 | i0 | 93.194 | 39.8429319371728 | 191 | 13 | 100 | 0 | 1 | 191 | 2557675 | 2557485 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 7610 | 281 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 16633923 | 16633923 | PRJEB39269_P_NODE_64654_length_172_cov_1.518797_g64249_i0 | PRJEB39269 | 64654 | 172 | 1.518797 | 2.61233084 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 213 | 6.25e-51 | NTclustered | gi|2874253779|emb|OY969763.1| | 412056 | g64249 | i0 | 94.891 | 12.3720930232558 | 137 | 6 | 79 | 1 | 32 | 167 | 3832125 | 3832261 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 | blastn | 2128 | 213 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 16633937 | 16633937 | PRJEB39269_P_NODE_74934_length_163_cov_1.112903_g74529_i0 | PRJEB39269 | 74934 | 163 | 1.112903 | 1.81403189 | Akkermansiaceae bacterium | 2562705 | Bacteria | Bacteria | 274 | 2.66e-69 | NTclustered | gi|2022020957|gb|CP059069.1| | 2562705 | g74529 | i0 | 96.933 | 158.104294478528 | 163 | 5 | 100 | 0 | 1 | 163 | 3412685 | 3412523 | Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome | blastn | 25771 | 274 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium | ||
| 21391374 | 21391374 | PRJEB39269_P_NODE_88957_length_152_cov_1.088496_g88552_i0 | PRJEB39269 | 88957 | 152 | 1.088496 | 1.65451392 | Verrucomicrobiales | 48461 | Bacteria | Bacteria | 158 | 2.56e-34 | NTclustered | gi|2022020957|gb|CP059069.1| | 2562705 | g88552 | i0 | 89.516 | 14.3355263157895 | 124 | 13 | 82 | 0 | 11 | 134 | 3412204 | 3412327 | Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome | blastn | 2179 | 158 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;