RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB39269" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB39269 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7709424 7709424 PRJEB39269_P_NODE_27287_length_267_cov_0.960526_g26882_i0 PRJEB39269 27287 267 0.960526 2.56460442 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 326 1.3e-84   NTclustered gi|2874253728|emb|OY969570.1| 412054 g26882 i0 90.612 56.4531835205993 245 23 92 0 1 245 172868 172624 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 15073 326 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
8984137 8984137 PRJEB39269_P_NODE_54828_length_186_cov_1.115646_g54423_i0 PRJEB39269 54828 186 1.115646 2.07510156 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 244 2.44e-60   NTclustered gi|575456455|gb|CP007128.1| 861299 g54423 i0 91.16 119.720430107527 181 14 97 2 1 180 3044970 3045149 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 22268 244 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
11535236 11535236 PRJEB39269_P_NODE_34590_length_235_cov_0.964286_g34185_i0 PRJEB39269 34590 235 0.964286 2.2660721 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 364 2.38e-96   NTclustered gi|2874253978|emb|OY970303.1| 412054 g34185 i0 96 142.702127659574 225 7 97 2 9 232 1903853 1904076 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 33535 364 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;