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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJEB39269" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 19 ✖

bioproject 1

  • PRJEB39269 · 19 ✖

analysis 1

  • blastn · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
989249 989249 PRJEB39269_P_NODE_72621_length_165_cov_1.626984_g72216_i0 PRJEB39269 72621 165 1.626984 2.6845236 Chlorellaceae 35461 Plants Plants 65.8 1.77e-6   NTclustered gi|2724824493|gb|PP746561.1| 97105 g72216 i0 91.667 6.55757575757576 48 3 28 1 1 47 421 374 Marvania geminata culture SAG:12.88 mitochondrion, complete genome blastn 1082 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata
2264529 2264529 PRJEB39269_P_NODE_24202_length_284_cov_1.959184_g23797_i0 PRJEB39269 24202 284 1.959184 5.56408256 Chlorophyta 3041 Plants Plants 351 2.31e-92   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g23797 i0 89.161 106.183098591549 286 25 100 5 1 284 148799 149080 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 30156 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
2607023 2607023 PRJEB39269_P_NODE_8803_length_466_cov_7.969555_g8405_i0 PRJEB39269 8803 466 7.969555 37.1381263 Trebouxia sp. SL0000003 3350044 Plants Plants 58.4 0.001   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g8405 i0 100 0.133047210300429 31 0 7 0 377 407 2994164 2994134 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 62 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
3539788 3539788 PRJEB39269_P_NODE_68983_length_169_cov_1.576923_g68578_i0 PRJEB39269 68983 169 1.576923 2.66499987 Chlorophyta 3041 Plants Plants 169 1.34e-37   NTclustered gi|2254866750|gb|MW900257.1| 3077 g68578 i0 84.94 98.8343195266272 166 25 98 0 3 168 439 274 Chlorella vulgaris chloroplast, complete genome blastn 16703 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
4817105 4817105 PRJEB39269_P_NODE_28864_length_258_cov_10.844749_g28459_i0 PRJEB39269 28864 258 10.844749 27.97945242 Eukaryota 2759 Plants Plants 477 3.2699999999999985e-130   NTclustered gi|1201359270|gb|MF040792.1| 3078 g28459 i0 100 99.9961240310078 258 0 100 0 1 258 366 109 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 25799 477 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
7709490 7709490 PRJEB39269_P_NODE_82127_length_157_cov_1.661017_g81722_i0 PRJEB39269 82127 157 1.661017 2.60779669 Edaphochlorella mirabilis 3083 Plants Plants 130 5.820000000000001e-26   NTclustered gi|725675941|ref|NC_025528.1| 3083 g81722 i0 81.529 9.42675159235669 157 29 100 0 1 157 2708 2864 'Chlorella' mirabilis culture-collection SAG:38.88 chloroplast, complete genome blastn 1480 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Edaphochlorella Edaphochlorella mirabilis
8984196 8984196 PRJEB39269_P_NODE_89568_length_151_cov_1.946429_g89163_i0 PRJEB39269 89568 151 1.946429 2.93910779 Chlamydomonas zimbabwiensis 158510 Plants Plants 235 1.14e-57   NTclustered gi|66864303|gb|DQ015758.1| 158510 g89163 i0 94.702 30.9006622516556 151 8 100 0 1 151 3230 3080 Chlamydomonas zimbabwiensis strain UTEX 2214 26S ribosomal RNA gene, partial sequence blastn 4666 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas zimbabwiensis
10259867 10259867 PRJEB39269_P_NODE_68309_length_170_cov_1.137405_g67904_i0 PRJEB39269 68309 170 1.137405 1.9335885 Pedinophyceae sp. YPF-701 765719 Plants Plants 158 2.93e-34   NTclustered gi|307931079|dbj|AB561039.1| 765719 g67904 i0 88.55 40.5117647058824 131 13 76 2 39 168 267 396 Pedinophyceae sp. YPF-701 chloroplast PsaB gene for photosystem I P700 apoprotein A2, partial cds blastn 6887 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
12468391 12468391 PRJEB39269_P_NODE_86210_length_154_cov_1.252174_g85805_i0 PRJEB39269 86210 154 1.252174 1.92834796 Chlorophyta 3041 Plants Plants 285 1.14e-72   NTclustered gi|359385262|emb|FR865676.1| 3082 g85805 i0 100 99.987012987013 154 0 100 0 1 154 816 663 'Chlorella' saccharophila genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 211/57 blastn 15398 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
12810583 12810583 PRJEB39269_P_NODE_44371_length_206_cov_1.353293_g43966_i0 PRJEB39269 44371 206 1.353293 2.78778358 Chlamydomonas sp. CCMP235 327070 Plants Plants 276 9.82e-70   NTclustered gi|2243438197|emb|LR798803.1| 327070 g43966 i0 90.777 6.02912621359223 206 19 100 0 1 206 7017 6812 Chlamydomonas sp. CCMP235 partial 45s rRNA cluster gene for 45s rRNA cluster blastn 1242 276 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. CCMP235
13742732 13742732 PRJEB39269_P_NODE_7691_length_497_cov_1.541485_g7295_i0 PRJEB39269 7691 497 1.541485 7.66118045 Chlorogonium 52027 Plants Plants 778 0   NTclustered gi|17028187|gb|L42860.1|CGZCPRGOL 52029 g7295 i0 95.325 138.595573440644 492 20 99 3 8 497 3771 3281 Chlorogonium elongatum chloroplast large-subunit ribosomal RNA (rrnL), site-specific DNA endonuclease I-CelI gene blastn 68882 778 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Chlorogonium Chlorogonium elongatum
14085352 14085352 PRJEB39269_P_NODE_51472_length_191_cov_2.407895_g51067_i0 PRJEB39269 51472 191 2.407895 4.59907945 Sarcinofilum mucosum 141643 Plants Plants 348 1.87e-91   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g51067 i0 99.476 121.251308900524 191 1 100 0 1 191 146797 146987 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 23159 348 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
15017110 15017110 PRJEB39269_P_NODE_72552_length_165_cov_1.793651_g72147_i0 PRJEB39269 72552 165 1.793651 2.95952415 Chlorophyceae 3166 Plants Plants 235 1.28e-57   NTclustered gi|953272850|gb|KT625416.1| 51730 g72147 i0 92.638 137.684848484848 163 12 99 0 3 165 134078 133916 Chloromonas perforata culture-collection SAG:11-43 chloroplast, partial genome blastn 22718 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas perforata
15359191 15359191 PRJEB39269_P_NODE_15333_length_358_cov_3.479624_g14928_i0 PRJEB39269 15333 358 3.479624 12.45705392 Sarcinofilum mucosum 141643 Plants Plants 606 5.769999999999998e-169   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g14928 i0 97.207 107.494413407821 358 10 100 0 1 358 149548 149191 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 38483 606 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
15359215 15359215 PRJEB39269_P_NODE_45273_length_204_cov_1.236364_g44868_i0 PRJEB39269 45273 204 1.236364 2.52218256 Chlamydomonas pulsatilla 57475 Plants Plants 243 9.84e-60   NTclustered gi|66864277|gb|DQ015732.1| 57475 g44868 i0 88.293 6.72549019607843 205 21 100 3 1 204 3237 3035 Chlamydomonas pulsatilla strain UTEX 410 26S ribosomal RNA gene, partial sequence blastn 1372 243 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas pulsatilla
16633887 16633887 PRJEB39269_P_NODE_21774_length_300_cov_3.482759_g21369_i0 PRJEB39269 21774 300 3.482759 10.448277 Sarcinofilum mucosum 141643 Plants Plants 505 1.7799999999999995e-138   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g21369 i0 97 108.773333333333 300 9 100 0 1 300 151205 150906 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 32632 505 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
21733822 21733822 PRJEB39269_P_NODE_61218_length_176_cov_4.525547_g60813_i0 PRJEB39269 61218 176 4.525547 7.96496272 Sarcinofilum mucosum 141643 Plants Plants 315 1.7199999999999996e-81   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g60813 i0 98.864 118.545454545455 176 2 100 0 1 176 147167 146992 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 20864 315 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
23941599 23941599 PRJEB39269_P_NODE_83419_length_156_cov_1.538462_g83014_i0 PRJEB39269 83419 156 1.538462 2.40000072 root 1 Root_unresolved Root_unresolved 206 9.32e-49   NTclustered gi|1197510977|ref|NC_034710.1| 44573 g83014 i0 95.349 85.8846153846154 129 6 83 0 28 156 101186 101314 Pseudoneochloris marina culture UTEX:1445 chloroplast, complete genome blastn 13398 206 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Sykidiales Sykidiacaeae Sykidion Sykidion marinum
24282831 24282831 PRJEB39269_P_NODE_24820_length_280_cov_3.684647_g24415_i0 PRJEB39269 24820 280 3.684647 10.3170116 Desmochloris halophila 138176 Plants Plants 420 6.139999999999998e-113   NTclustered gi|371782086|emb|HE610118.1| 138176 g24415 i0 93.907 62.4464285714286 279 16 99 1 1 279 3721 3998 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 17485 420 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;