RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB39269" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJEB39269 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
57082 57082 PRJEB39269_P_NODE_34181_length_236_cov_1.934010_g33776_i0 PRJEB39269 34181 236 1.93401 4.5642636 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 390 3.9499999999999996e-104   NTclustered gi|27461806|gb|AY130826.1| 56466 g33776 i0 96.61 1 236 6 100 1 1 236 322 89 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 236 390 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
6092332 6092332 PRJEB39269_P_NODE_32305_length_243_cov_2.338235_g31900_i0 PRJEB39269 32305 243 2.338235 5.68191105 Peranema 3287 Euglenozoa other_Eukaryota 387 5.29e-103   NTclustered gi|1803019098|gb|MT007870.1| 56466 g31900 i0 95.492 5.90534979423868 244 8 100 3 1 243 1161 920 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 1435 387 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
18840938 18840938 PRJEB39269_P_NODE_55695_length_184_cov_2.262069_g55290_i0 PRJEB39269 55695 184 2.262069 4.16220696 Peranema 3287 Euglenozoa other_Eukaryota 268 1.43e-67   NTclustered gi|1803019098|gb|MT007870.1| 56466 g55290 i0 92.973 7.03804347826087 185 11 100 2 1 184 702 885 Peranema trichophorum strain PtR small subunit ribosomal RNA gene, partial sequence blastn 1295 268 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
20457895 20457895 PRJEB39269_P_NODE_69697_length_168_cov_2.403101_g69292_i0 PRJEB39269 69697 168 2.403101 4.03720968 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 283 4.6e-72   NTclustered gi|27461806|gb|AY130826.1| 56466 g69292 i0 97.024 1 168 5 100 0 1 168 536 369 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 168 283 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
23009094 23009094 PRJEB39269_P_NODE_26679_length_270_cov_1.324675_g26274_i0 PRJEB39269 26679 270 1.324675 3.5766225 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 418 2.1199999999999993e-112   NTclustered gi|1803019516|gb|MT007902.1| 56466 g26274 i0 94.815 9.87037037037037 270 11 99 3 1 269 148 415 Peranema trichophorum isolate PP8 small subunit ribosomal RNA gene, partial sequence blastn 2665 418 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;