RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 6 ✖

bioproject 1

  • PRJEB36940 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3882877 3882877 PRJEB36940_P_NODE_2224_length_568_cov_2.519192_g2099_i0 PRJEB36940 2224 568 2.519192 14.30901056 Lentivirus humimdef1 3418650 Viruses Viruses 62.1 9.31e-5   NTclustered gi|407734945|gb|JX447155.1| 11676 g2099 i0 95 0.140845070422535 40 0 7 2 401 440 4394 4357 HIV-1 isolate AA039a03R from Thailand pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 80 62.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
11534871 11534871 PRJEB36940_P_NODE_10090_length_276_cov_1.044335_g9961_i0 PRJEB36940 10090 276 1.044335 2.8823646 Caudoviricetes sp. 2832643 Viruses Viruses 433 7.76e-117   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g9961 i0 94.928 294.141304347826 276 14 100 0 1 276 18034 17759 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 81183 433 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
11534923 11534923 PRJEB36940_P_NODE_14770_length_245_cov_0.906977_g14641_i0 PRJEB36940 14770 245 0.906977 2.22209365 Thermus phage Tsatsa 3289881 Viruses Viruses 453 5.1900000000000006e-123   NTclustered gi|2847668352|gb|PQ109078.1| 3289881 g14641 i0 100 1 245 0 100 0 1 245 10518 10762 Thermus phage Tsatsa, complete genome blastn 245 453 1 Viruses               Thermus phage Tsatsa
12810390 12810390 PRJEB36940_P_NODE_9231_length_286_cov_2.262911_g9102_i0 PRJEB36940 9231 286 2.262911 6.47192546 Hainan alphaflexivirus 2 2824425 Viruses Viruses 424 4.86e-114   NTclustered gi|2075444288|gb|MW897284.1| 2824425 g9102 i0 93.403 71.2622377622378 288 15 100 4 1 286 4504 4219 MAG: Hainan alphaflexivirus 2 isolate R87-k141_314575 replicase gene, partial cds; and NTP-binding helicase and hypothetical protein genes, complete cds blastn 20381 424 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae   Hainan alphaflexivirus 2
14085139 14085139 PRJEB36940_P_NODE_7792_length_310_cov_1.219409_g7663_i0 PRJEB36940 7792 310 1.219409 3.7801679 Thermus phage phiLo 2301536 Viruses Viruses 62.1 4.81e-5   NTclustered gi|1490638517|gb|MH673673.1| 2301536 g7663 i0 94.872 0.125806451612903 39 2 13 0 255 293 161486 161448 Thermus phage phiLo, complete genome blastn 39 62.1 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Thermus phage phiLo
23008779 23008779 PRJEB36940_P_NODE_14759_length_245_cov_0.906977_g14630_i0 PRJEB36940 14759 245 0.906977 2.22209365 Caudoviricetes sp. 2832643 Viruses Viruses 52.8 0.022   NTclustered gi|2057938007|tpg|BK045927.1| 2832643 g14630 i0 100 0.114285714285714 28 0 11 0 148 175 2940 2967 MAG TPA_asm: Caudoviricetes sp. isolate ctbog3, partial genome blastn 28 52.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;