contig_metadata
16 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Oomycota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56759 | 56759 | PRJEB36940_P_NODE_13481_length_249_cov_0.880682_g13352_i0 | PRJEB36940 | 13481 | 249 | 0.880682 | 2.19289818 | Phytophthora ramorum | 164328 | SAR_Eukaryotes | SAR_Eukaryotes | 121 | 6.09e-23 | NTclustered | gi|2794925534|ref|XM_067883139.1| | 164328 | g13352 | i0 | 86.364 | 1.82730923694779 | 110 | 15 | 44 | 0 | 116 | 225 | 145 | 254 | Phytophthora ramorum Eukaryotic translation initiation factor 2 subunit alpha (KRP23_12511), partial mRNA | blastn | 455 | 121 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora ramorum | ||
| 2606657 | 2606657 | PRJEB36940_P_NODE_12583_length_251_cov_2.500000_g12454_i0 | PRJEB36940 | 12583 | 251 | 2.5 | 6.275 | Phytophthora nicotianae | 4792 | SAR_Eukaryotes | SAR_Eukaryotes | 122 | 1.7099999999999998e-23 | NTclustered | gi|675206244|ref|XM_008913759.1| | 761204 | g12454 | i0 | 78.238 | 1.63745019920319 | 193 | 40 | 76 | 2 | 51 | 242 | 115 | 306 | Phytophthora parasitica INRA-310 60S ribosomal protein L11 mRNA | blastn | 411 | 122 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora nicotianae | ||
| 5159072 | 5159072 | PRJEB36940_P_NODE_14985_length_244_cov_1.824561_g14856_i0 | PRJEB36940 | 14985 | 244 | 1.824561 | 4.45192884 | Pythium monospermum | 92964 | SAR_Eukaryotes | SAR_Eukaryotes | 435 | 1.87e-117 | NTclustered | gi|33520250|gb|AY273995.1| | 92964 | g14856 | i0 | 98.77 | 101.532786885246 | 244 | 3 | 100 | 0 | 1 | 244 | 465 | 708 | Pythium monospermum large subunit ribosomal RNA gene, partial sequence | blastn | 24774 | 435 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Pythiales | Pythiaceae | Pythium | Pythium monospermum | ||
| 5159079 | 5159079 | PRJEB36940_P_NODE_1565_length_668_cov_5.191597_g1445_i0 | PRJEB36940 | 1565 | 668 | 5.191597 | 34.67986796 | Aphanomyces invadans | 157072 | SAR_Eukaryotes | SAR_Eukaryotes | 244 | 1.02e-59 | NTclustered | gi|673039884|ref|XM_008875681.1| | 157072 | g1445 | i0 | 77.305 | 12.9131736526946 | 423 | 90 | 63 | 6 | 41 | 460 | 31 | 450 | Aphanomyces invadans 60S ribosomal protein mRNA | blastn | 8626 | 244 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces invadans | ||
| 7709151 | 7709151 | PRJEB36940_P_NODE_2947_length_494_cov_1.446556_g2820_i0 | PRJEB36940 | 2947 | 494 | 1.446556 | 7.14598664 | Aphanomyces astaci | 112090 | SAR_Eukaryotes | SAR_Eukaryotes | 231 | 5.77e-56 | NTclustered | gi|698791735|ref|XM_009830598.1| | 112090 | g2820 | i0 | 77.349 | 18.419028340081 | 415 | 79 | 82 | 12 | 58 | 463 | 81 | 489 | Aphanomyces astaci malate dehydrogenase, NAD-dependent mRNA | blastn | 9099 | 231 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces astaci | ||
| 10259458 | 10259458 | PRJEB36940_P_NODE_11489_length_260_cov_1.668449_g11360_i0 | PRJEB36940 | 11489 | 260 | 1.668449 | 4.3379674 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 141 | 4.9199999999999993e-29 | NTclustered | gi|695403666|ref|XM_009525044.1| | 67593 | g11360 | i0 | 80.435 | 61.0615384615385 | 184 | 36 | 71 | 0 | 11 | 194 | 222 | 39 | Phytophthora sojae hypothetical protein mRNA | blastn | 15876 | 141 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 10259503 | 10259503 | PRJEB36940_P_NODE_1869_length_616_cov_1.858195_g1749_i0 | PRJEB36940 | 1869 | 616 | 1.858195 | 11.4464812 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 302 | 5.490000000000001e-77 | NTclustered | gi|813119301|ref|XM_012340833.1| | 695850 | g1749 | i0 | 79.905 | 51.9350649350649 | 423 | 75 | 68 | 10 | 191 | 608 | 562 | 979 | Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA | blastn | 31992 | 302 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 11534968 | 11534968 | PRJEB36940_P_NODE_3070_length_485_cov_1.446602_g2943_i0 | PRJEB36940 | 3070 | 485 | 1.446602 | 7.0160197 | Aphanomyces invadans | 157072 | SAR_Eukaryotes | SAR_Eukaryotes | 270 | 1.1999999999999998e-67 | NTclustered | gi|673019759|ref|XM_008865619.1| | 157072 | g2943 | i0 | 80.925 | 30.6515463917526 | 346 | 62 | 71 | 4 | 103 | 446 | 127 | 470 | Aphanomyces invadans 40S ribosomal protein S23 mRNA | blastn | 14866 | 270 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces invadans | ||
| 13742442 | 13742442 | PRJEB36940_P_NODE_11131_length_264_cov_1.471204_g11002_i0 | PRJEB36940 | 11131 | 264 | 1.471204 | 3.88397856 | Phytophthora | 4783 | SAR_Eukaryotes | SAR_Eukaryotes | 180 | 1.06e-40 | NTclustered | gi|2795026849|ref|XM_067926286.1| | 4785 | g11002 | i0 | 84.043 | 23.9507575757576 | 188 | 29 | 71 | 1 | 77 | 264 | 33 | 219 | Phytophthora cinnamomi succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial (IUM83_02375), partial mRNA | blastn | 6323 | 180 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 15358966 | 15358966 | PRJEB36940_P_NODE_5833_length_355_cov_1.936170_g5704_i0 | PRJEB36940 | 5833 | 355 | 1.93617 | 6.8734035 | Phytophthora ramorum | 164328 | SAR_Eukaryotes | SAR_Eukaryotes | 254 | 8.58e-63 | NTclustered | gi|2794905809|ref|XM_067889902.1| | 164328 | g5704 | i0 | 82.474 | 68.6084507042253 | 291 | 49 | 82 | 2 | 54 | 343 | 23 | 312 | Phytophthora ramorum 13 kDa ribonucleoprotein-associated protein (KRP23_4892), partial mRNA | blastn | 24356 | 254 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora ramorum | ||
| 16633588 | 16633588 | PRJEB36940_P_NODE_1494_length_683_cov_3.898361_g1374_i0 | PRJEB36940 | 1494 | 683 | 3.898361 | 26.62580563 | Saprolegnia parasitica | 101203 | SAR_Eukaryotes | SAR_Eukaryotes | 368 | 5.96e-97 | NTclustered | gi|813142527|ref|XM_012343931.1| | 695850 | g1374 | i0 | 77.19 | 70.4626647144949 | 662 | 131 | 96 | 17 | 10 | 664 | 721 | 73 | Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA | blastn | 48126 | 368 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 16633721 | 16633721 | PRJEB36940_P_NODE_9034_length_289_cov_1.439815_g8905_i0 | PRJEB36940 | 9034 | 289 | 1.439815 | 4.16106535 | Aphanomyces astaci | 112090 | SAR_Eukaryotes | SAR_Eukaryotes | 195 | 4.2e-45 | NTclustered | gi|698801103|ref|XM_009835279.1| | 112090 | g8905 | i0 | 86.441 | 62.3356401384083 | 177 | 24 | 61 | 0 | 110 | 286 | 624 | 800 | Aphanomyces astaci adenosylhomocysteinase 2 mRNA | blastn | 18015 | 195 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces astaci | ||
| 19182202 | 19182202 | PRJEB36940_P_NODE_13236_length_249_cov_2.363636_g13107_i0 | PRJEB36940 | 13236 | 249 | 2.363636 | 5.88545364 | Albugo laibachii | 653948 | SAR_Eukaryotes | SAR_Eukaryotes | 416 | 6.939999999999999e-112 | NTclustered | gi|325194231|emb|FR825088.1| | 890382 | g13107 | i0 | 96.787 | 1.92771084337349 | 249 | 8 | 100 | 0 | 1 | 249 | 1133 | 1381 | Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 | blastn | 480 | 416 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Albuginales | Albuginaceae | Albugo | Albugo laibachii | ||
| 20457516 | 20457516 | PRJEB36940_P_NODE_11217_length_263_cov_1.610526_g11088_i0 | PRJEB36940 | 11217 | 263 | 1.610526 | 4.23568338 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 122 | 1.8e-23 | NTclustered | gi|2795047393|ref|XM_067937896.1| | 4785 | g11088 | i0 | 87.156 | 1.13688212927757 | 109 | 12 | 41 | 2 | 52 | 159 | 10 | 117 | Phytophthora cinnamomi Nucleoside diphosphate kinase B (IUM83_13233), partial mRNA | blastn | 299 | 122 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 20457561 | 20457561 | PRJEB36940_P_NODE_16097_length_240_cov_2.802395_g15968_i0 | PRJEB36940 | 16097 | 240 | 2.802395 | 6.725748 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 169 | 2.05e-37 | NTclustered | gi|695420111|ref|XM_009529545.1| | 67593 | g15968 | i0 | 82.979 | 10.2125 | 188 | 30 | 78 | 2 | 6 | 192 | 199 | 13 | Phytophthora sojae hypothetical protein mRNA | blastn | 2451 | 169 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 24282612 | 24282612 | PRJEB36940_P_NODE_4760_length_391_cov_1.421384_g4631_i0 | PRJEB36940 | 4760 | 391 | 1.421384 | 5.55761144 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 250 | 1.23e-61 | NTclustered | gi|695388802|ref|XM_009520976.1| | 67593 | g4631 | i0 | 82.686 | 59.5473145780051 | 283 | 47 | 72 | 2 | 95 | 376 | 419 | 700 | Phytophthora sojae hypothetical protein partial mRNA | blastn | 23283 | 250 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;