RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB36940 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3882849 3882849 PRJEB36940_P_NODE_15564_length_243_cov_0.911765_g15435_i0 PRJEB36940 15564 243 0.911765 2.21558895 Nitrospira sp. 70125 Bacteria Bacteria 333 6.989999999999999e-87   NTclustered gi|2511640680|gb|CP126121.1| 70125 g15435 i0 91.358 15.9341563786008 243 21 100 0 1 243 201615 201373 MAG: Nitrospira sp. isolate bin_001 chromosome, complete genome blastn 3872 333 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
24282542 24282542 PRJEB36940_P_NODE_13680_length_248_cov_0.891429_g13551_i0 PRJEB36940 13680 248 0.891429 2.21074392 Nitrospira sp. 70125 Bacteria Bacteria 298 2.61e-76   NTclustered gi|2194432121|gb|CP092081.1| 70125 g13551 i0 88.306 3.52822580645161 248 29 100 0 1 248 2228285 2228532 MAG: Nitrospira sp. isolate UBC2 chromosome blastn 875 298 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;