RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
56870 56870 PRJEB36940_P_NODE_6101_length_347_cov_4.021898_g5972_i0 PRJEB36940 6101 347 4.021898 13.95598606 Pristionchus pauli 376545 Nematoda Nematoda 183 1.12e-41   NTclustered gi|150984443|gb|EF634864.1| 376545 g5972 i0 78.967 10.5734870317003 271 55 78 2 34 303 285 16 Pristionchus pauli small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 3669 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
12810254 12810254 PRJEB36940_P_NODE_13411_length_249_cov_0.886364_g13282_i0 PRJEB36940 13411 249 0.886364 2.20704636 Strongyloides ratti 34506 Nematoda Nematoda 200 7.61e-47   NTclustered gi|1376147001|ref|XM_024654123.1| 34506 g13282 i0 82.759 10.1164658634538 232 32 92 6 19 246 295 522 Strongyloides ratti Catalase (SRAE_2000298400), partial mRNA blastn 2519 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15358934 15358934 PRJEB36940_P_NODE_3893_length_432_cov_3.459610_g3764_i0 PRJEB36940 3893 432 3.45961 14.945515199999999 Pristionchus pauli 376545 Nematoda Nematoda 287 1.05e-72   NTclustered gi|150982019|gb|EF634598.1| 376545 g3764 i0 81.215 5.22222222222222 362 62 83 6 67 425 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 287 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;