RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3882911 3882911 PRJEB36940_P_NODE_4084_length_423_cov_1.362857_g3955_i0 PRJEB36940 4084 423 1.362857 5.76488511 Biomphalaria glabrata 6526 Mollusca Mollusca 56.5 0.003   NTclustered gi|2502113690|ref|XM_013210803.2| 6526 g3955 i0 96.97 0.0780141843971631 33 1 8 0 180 212 1091 1059 PREDICTED: Biomphalaria glabrata uncharacterized LOC106054776 (LOC106054776), transcript variant X2, mRNA blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
12810259 12810259 PRJEB36940_P_NODE_14191_length_247_cov_0.890805_g14062_i0 PRJEB36940 14191 247 0.890805 2.20028835 Mytilus californianus 6549 Mollusca Mollusca 54.7 0.006   NTclustered gi|2334705242|ref|XM_052243844.1| 6549 g14062 i0 100 0.117408906882591 29 0 12 0 48 76 1060 1032 PREDICTED: Mytilus californianus uncharacterized LOC127734145 (LOC127734145), transcript variant X1, mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
12810304 12810304 PRJEB36940_P_NODE_3091_length_483_cov_1.682927_g2964_i0 PRJEB36940 3091 483 1.682927 8.12853741 Mercenaria mercenaria 6596 Mollusca Mollusca 300 1.52e-76   NTclustered gi|2442058763|ref|XM_045347307.2| 6596 g2964 i0 79.215 81.1138716356108 433 88 89 2 1 432 630 199 PREDICTED: Mercenaria mercenaria uncharacterized LOC123556531 (LOC123556531), mRNA blastn 39178 300 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
15358836 15358836 PRJEB36940_P_NODE_10513_length_271_cov_1.505051_g10384_i0 PRJEB36940 10513 271 1.505051 4.07868821 Patella vulgata 6465 Mollusca Mollusca 52.8 0.025   NTclustered gi|2506320687|ref|XM_050541306.2| 6465 g10384 i0 100 0.103321033210332 28 0 10 0 120 147 2900 2873 PREDICTED: Patella vulgata multidrug and toxin extrusion protein 1 (LOC126815593), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;