RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10259587 10259587 PRJEB36940_P_NODE_5609_length_362_cov_1.079585_g5480_i0 PRJEB36940 5609 362 1.079585 3.9080977 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 448 3.7499999999999997e-121   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g5480 i0 89.011 57.767955801105 364 37 100 3 1 362 1103284 1102922 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 20912 448 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
23941330 23941330 PRJEB36940_P_NODE_12299_length_252_cov_2.569832_g12170_i0 PRJEB36940 12299 252 2.569832 6.47597664 Gemmatimonas 173479 Bacteria Bacteria 427 3.2499999999999993e-115   NTclustered gi|470475286|ref|NR_076270.1| 173480 g12170 i0 97.222 20.9603174603175 252 7 100 0 1 252 853 1104 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 5282 427 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;