RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB36940 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2606795 2606795 PRJEB36940_P_NODE_8523_length_296_cov_2.542601_g8394_i0 PRJEB36940 8523 296 2.542601 7.52609896 Woronina pythii 1484336 SAR_Eukaryotes SAR_Eukaryotes 196 1.2e-45   NTclustered gi|1031965309|gb|KX011114.1| 1484336 g8394 i0 80.287 52.1047297297297 279 40 93 13 3 277 4218 3951 Woronina pythii isolate PD0236 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15423 196 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Woronina Woronina pythii
7709241 7709241 PRJEB36940_P_NODE_8647_length_294_cov_2.117647_g8518_i0 PRJEB36940 8647 294 2.117647 6.22588218 Maullinia ectocarpi 933485 SAR_Eukaryotes SAR_Eukaryotes 156 2.02e-33   NTclustered gi|1031965308|gb|KX011113.1| 933485 g8518 i0 91.964 34.5850340136054 112 7 38 2 149 259 4857 4967 Maullinia ectocarpi isolate CCAP 1538/1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10168 156 1 Eukaryota Sar   Endomyxa Phytomyxea Phagomyxida   Maullinia Maullinia ectocarpi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;