RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
988976 988976 PRJEB36940_P_NODE_16181_length_237_cov_3.140244_g16052_i0 PRJEB36940 16181 237 3.140244 7.44237828 Parachlamydia 83551 Bacteria Bacteria 311 3.18e-80   NTclustered gi|470491594|ref|NR_077046.1| 83552 g16052 i0 90.295 232.898734177215 237 23 100 0 1 237 2337 2101 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 55197 311 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
2606755 2606755 PRJEB36940_P_NODE_5423_length_367_cov_5.139456_g5294_i0 PRJEB36940 5423 367 5.139456 18.86180352 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 601 2.7599999999999993e-167   NTclustered gi|2874253811|emb|OY969795.1| 464461 g5294 i0 96.185 117.58038147139 367 14 100 0 1 367 654394 654028 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 43152 601 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
5159090 5159090 PRJEB36940_P_NODE_16225_length_235_cov_3.444444_g16096_i0 PRJEB36940 16225 235 3.444444 8.0944434 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 226 1.1699999999999999e-54   NTclustered gi|2874253811|emb|OY969795.1| 464461 g16096 i0 85.202 27.6936170212766 223 29 94 4 1 222 2060259 2060040 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 6508 226 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
8983966 8983966 PRJEB36940_P_NODE_9548_length_282_cov_2.770335_g9419_i0 PRJEB36940 9548 282 2.770335 7.8123447 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 374 4.89e-99   NTclustered gi|2874253811|emb|OY969795.1| 464461 g9419 i0 90.592 108.478723404255 287 20 100 6 1 282 655318 655034 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 30591 374 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
19182259 19182259 PRJEB36940_P_NODE_3016_length_488_cov_4.563855_g2889_i0 PRJEB36940 3016 488 4.563855 22.2716124 Neochlamydia hartmannellae 112235 Bacteria Bacteria 686 0   NTclustered gi|219857449|ref|NR_025037.1| 112235 g2889 i0 92.708 106.622950819672 480 27 98 8 1 476 655 180 Neochlamydia hartmannellae strain A1Hsp 16S ribosomal RNA, partial sequence blastn 52032 686 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
23008761 23008761 PRJEB36940_P_NODE_12599_length_251_cov_1.820225_g12470_i0 PRJEB36940 12599 251 1.820225 4.56876475 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 414 2.52e-111   NTclustered gi|2874253811|emb|OY969795.1| 464461 g12470 i0 96.414 134.486055776892 251 9 100 0 1 251 652457 652707 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 33756 414 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;