RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB36940 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4816857 4816857 PRJEB36940_P_NODE_14664_length_245_cov_1.610465_g14535_i0 PRJEB36940 14664 245 1.610465 3.94563925 Bacteria 2 Bacteria Bacteria 364 2.5e-96   NTclustered gi|2874253885|emb|OY970060.1| 171953 g14535 i0 93.469 165.065306122449 245 16 100 0 1 245 4841922 4841678 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 40441 364 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15358906 15358906 PRJEB36940_P_NODE_2393_length_547_cov_3.183544_g2267_i0 PRJEB36940 2393 547 3.183544 17.41398568 Luteitalea pratensis 1855912 Bacteria Bacteria 785 0   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g2267 i0 92.804 359.471663619744 542 39 99 0 1 542 654511 655052 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 196631 785 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
17908478 17908478 PRJEB36940_P_NODE_7795_length_310_cov_1.151899_g7666_i0 PRJEB36940 7795 310 1.151899 3.5708869 Vicinamibacteria bacterium 2793154 Bacteria Bacteria 52.8 0.029   NTclustered gi|2893358421|emb|OZ220713.1| 2793154 g7666 i0 100 0.193548387096774 28 0 9 0 98 125 2884239 2884266 MAG: Vicinamibacteria bacterium isolate f5636fb4-303b-4095-abf0-868cc3675b90 genome assembly, chromosome: 1 blastn 60 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria       Vicinamibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;