RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJEB36940 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7366557 7366557 PRJEB36940_P_NODE_14206_length_247_cov_0.890805_g14077_i0 PRJEB36940 14206 247 0.890805 2.20028835 Fusobacterium 848 Bacteria Bacteria 451 1.88e-122   NTclustered gi|1370537877|gb|CP028108.1| 860 g14077 i0 99.595 99.4574898785425 247 1 100 0 1 247 2153873 2154119 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 24566 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
11534926 11534926 PRJEB36940_P_NODE_15110_length_244_cov_0.912281_g14981_i0 PRJEB36940 15110 244 0.912281 2.22596564 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1276718681|gb|CP024704.1| 2663009 g14981 i0 100 493.532786885246 244 0 100 0 1 244 395303 395546 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome blastn 120422 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
23008740 23008740 PRJEB36940_P_NODE_10659_length_269_cov_1.627551_g10530_i0 PRJEB36940 10659 269 1.627551 4.37811219 Fusobacterium varium 856 Bacteria Bacteria 409 1.27e-109   NTclustered gi|1540073569|emb|LR134390.1| 856 g10530 i0 94.139 183.148698884758 273 8 100 7 1 269 514358 514090 Fusobacterium varium strain NCTC10560 genome assembly, chromosome: 1 blastn 49267 409 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
23008915 23008915 PRJEB36940_P_NODE_8799_length_292_cov_1.557078_g8670_i0 PRJEB36940 8799 292 1.557078 4.54666776 Fusobacterium polymorphum 76857 Bacteria Bacteria 540 4.74e-149   NTclustered gi|2706407748|gb|CP077116.1| 76857 g8670 i0 100 442.202054794521 292 0 100 0 1 292 563046 562755 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 129123 540 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;