RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB36940" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJEB36940 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
56809 56809 PRJEB36940_P_NODE_301_length_1331_cov_10.562798_g240_i0 PRJEB36940 301 1331 10.562798 140.59084138 Ripella sp. 805 1217113 Discosea other_Eukaryota 1685 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g240 i0 94.79 82.6401202103681 1094 35 82 13 241 1331 1 1075 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 109994 1685 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
56842 56842 PRJEB36940_P_NODE_4801_length_389_cov_1.968354_g4672_i0 PRJEB36940 4801 389 1.968354 7.65689706 Acytostelium subglobosum 361139 Evosea other_Eukaryota 167 1.27e-36   NTclustered gi|831788452|ref|XM_012903297.1| 1410327 g4672 i0 75.811 10.9974293059126 339 76 86 5 50 385 1907 1572 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 4278 167 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
2606704 2606704 PRJEB36940_P_NODE_2243_length_565_cov_2.408537_g2118_i0 PRJEB36940 2243 565 2.408537 13.60823405 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 302 5.01e-77   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g2118 i0 79.493 48.2778761061947 434 81 76 7 136 565 96 525 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 27277 302 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5159107 5159107 PRJEB36940_P_NODE_2085_length_585_cov_3.572266_g1962_i0 PRJEB36940 2085 585 3.572266 20.8977561 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.004   NTclustered gi|470378920|ref|XM_004333477.1| 1257118 g1962 i0 94.444 0.0615384615384615 36 2 6 0 34 69 78 43 Acanthamoeba castellanii str. Neff Actobindin, putative (ACA1_256510), partial mRNA blastn 36 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11535029 11535029 PRJEB36940_P_NODE_6250_length_344_cov_2.295203_g6121_i0 PRJEB36940 6250 344 2.295203 7.89549832 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 189 2.38e-43   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g6121 i0 84.375 56.093023255814 192 30 56 0 141 332 121 312 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 19296 189 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11535076 11535076 PRJEB36940_P_NODE_9890_length_278_cov_1.517073_g9761_i0 PRJEB36940 9890 278 1.517073 4.21746294 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 438 1.6799999999999995e-118   NTclustered gi|62910949|gb|AY925001.1| 5778 g9761 i0 95.018 2.03597122302158 281 11 100 2 1 278 505 785 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 566 438 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15358967 15358967 PRJEB36940_P_NODE_5933_length_352_cov_2.810036_g5804_i0 PRJEB36940 5933 352 2.810036 9.89132672 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 427 4.7299999999999985e-115   NTclustered gi|62910949|gb|AY925001.1| 5778 g5804 i0 95.506 0.877840909090909 267 12 76 0 1 267 267 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 309 427 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17908397 17908397 PRJEB36940_P_NODE_2775_length_507_cov_6.071429_g2648_i0 PRJEB36940 2775 507 6.071429 30.78214503 Platyamoeba sp. strain CAZ7/I 325065 Discosea other_Eukaryota 774 0   NTclustered gi|62865947|gb|AY929922.1| 325065 g2648 i0 94.521 101.209072978304 511 13 99 12 2 507 1665 1165 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 51313 774 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
19182219 19182219 PRJEB36940_P_NODE_15616_length_243_cov_0.905882_g15487_i0 PRJEB36940 15616 243 0.905882 2.20129326 Protosteliopsis fimicola 668364 Evosea other_Eukaryota 370 5.32e-98   NTclustered gi|260909284|gb|FJ766470.1| 668364 g15487 i0 94.628 100.139917695473 242 8 99 3 1 242 1275 1039 Protosteliopsis fimicola culture-collection CCAP:1569/I clone 3 18S ribosomal RNA gene, partial sequence blastn 24334 370 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protosteliopsis Protosteliopsis fimicola
24282532 24282532 PRJEB36940_P_NODE_1260_length_741_cov_5.881737_g1141_i0 PRJEB36940 1260 741 5.881737 43.58367117 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 344 1.0899999999999997e-89   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g1141 i0 79.31 62.4493927125506 522 85 69 18 49 559 13 522 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 46275 344 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;