RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB3181 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3882119 3882119 PRJEB3181_P_NODE_724_length_658_cov_72.164274_g39_i3 PRJEB3181 724 658 72.164274 474.84092292 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 3.78e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g39 i3 81.461 17.2431610942249 178 30 27 3 223 398 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 11346 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
9917011 9917011 PRJEB3181_P_NODE_68_length_1342_cov_53.048818_g39_i1 PRJEB3181 68 1342 53.048818 711.91513756 Borreliella 64895 Bacteria Bacteria 143 7.920000000000001e-29   NTclustered gi|2537444985|gb|CP124072.1| 478174 g39 i1 74.041 33.9694485842027 443 74 32 32 694 1120 436792 436375 Borreliella carolinensis strain SCGT-18 chromosome, complete genome blastn 45587 143 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella carolinensis
10258746 10258746 PRJEB3181_P_NODE_69_length_1342_cov_48.572082_g39_i2 PRJEB3181 69 1342 48.572082 651.83734044 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 7.920000000000001e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g39 i2 81.461 31.8137108792846 178 30 13 3 223 398 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 42694 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
17907620 17907620 PRJEB3181_P_NODE_55_length_1387_cov_56.005900_g39_i0 PRJEB3181 55 1387 56.0059 776.801833 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 8.2e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g39 i0 81.461 33.0656092285508 178 30 13 3 223 398 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 45862 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;