RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB3181 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
55990 55990 PRJEB3181_P_NODE_2361_length_462_cov_11.661253_g2168_i0 PRJEB3181 2361 462 11.661253 53.87498886 Caenorhabditis briggsae 6238 Nematoda Nematoda 385 3.89e-102   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g2168 i0 88.474 72.7251082251082 321 33 69 4 1 319 989 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 33599 385 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
7366399 7366399 PRJEB3181_P_NODE_12366_length_241_cov_2.819048_g12102_i0 PRJEB3181 12366 241 2.819048 6.79390568 Metazoa 33208 Nematoda Nematoda 52.8 0.022   NTclustered gi|606419|emb|Z47069.1| 6239 g12102 i0 100 0.348547717842324 28 0 12 0 193 220 11346 11373 Caenorhabditis elegans Cosmid F36G3, complete sequence blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
7708382 7708382 PRJEB3181_S_NODE_1747_length_387_cov_6.829545_g1456_i0 PRJEB3181 1747 387 6.829545 26.43033915 Allodiplogaster sudhausi 2761625 Nematoda Nematoda 135 3.5700000000000005e-27   NTclustered gi|675118796|gb|KJ877267.1| 2761625 g1456 i0 74.615 14.7157622739018 390 59 100 27 1 387 1295 943 Koerneria sudhausi strain SB413 28S ribosomal RNA gene, partial sequence blastn 5695 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Allodiplogaster Allodiplogaster sudhausi
8642037 8642037 PRJEB3181_S_NODE_1127_length_448_cov_15671.452785_g848_i0 PRJEB3181 1127 448 15671.452785 70208.1084768 Caenorhabditis 6237 Nematoda Nematoda 289 3.04e-73   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g848 i0 87.649 58.4732142857143 251 27 56 4 200 448 1307 1059 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 26196 289 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
10258794 10258794 PRJEB3181_S_NODE_12769_length_181_cov_1.116438_g12476_i0 PRJEB3181 12769 181 1.116438 2.02075278 Rhabditoides inermis 96661 Nematoda Nematoda 150 5.299999999999999e-32   NTclustered gi|256709332|gb|GQ422341.1| 96661 g12476 i0 89.744 4.79558011049724 117 12 65 0 9 125 268 384 Rhabditoides inermis large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 868 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
11534272 11534272 PRJEB3181_S_NODE_1630_length_397_cov_361.908840_g1340_i0 PRJEB3181 1630 397 361.90884 1436.7780948 Rhabditella axei 35559 Nematoda Nematoda 95.3 6.23e-15   NTclustered gi|2648587517|gb|PP135622.1| 35559 g1340 i0 87.805 9.14105793450882 82 8 20 1 302 381 2346 2265 Rhabditella axei isolate Impruneta small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3629 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
14084329 14084329 PRJEB3181_S_NODE_12072_length_185_cov_7.540000_g11779_i0 PRJEB3181 12072 185 7.54 13.949 Radopholus similis 46012 Nematoda Nematoda 95.3 2.59e-15   NTclustered gi|1559669219|gb|MK333516.1| 46012 g11779 i0 86.207 3.95675675675676 87 12 47 0 1 87 656 570 Radopholus similis isolate RSTZ2 28S large subunit ribosomal RNA gene, partial sequence blastn 732 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
16291518 16291518 PRJEB3181_P_NODE_5233_length_354_cov_68.811146_g4983_i0 PRJEB3181 5233 354 68.811146 243.59145684 Metazoa 33208 Nematoda Nematoda 110 1.96e-19   NTclustered gi|2170965796|dbj|LC631545.1| 2836152 g4983 i0 86.735 4.36440677966102 98 13 28 0 241 338 2706 2609 Sychnotylenchus sp. NK-2021 Ht genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 1545 111 0.990990990990991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Sychnotylenchus Sychnotylenchus sp. NK-2021
21390990 21390990 PRJEB3181_S_NODE_2377_length_350_cov_29.619048_g2084_i0 PRJEB3181 2377 350 29.619048 103.666668 Metazoa 33208 Nematoda Nematoda 110 1.93e-19   NTclustered gi|2170965796|dbj|LC631545.1| 2836152 g2084 i0 86.735 4.41428571428571 98 13 28 0 248 345 2706 2609 Sychnotylenchus sp. NK-2021 Ht genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 1545 111 0.990990990990991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Sychnotylenchus Sychnotylenchus sp. NK-2021
23941184 23941184 PRJEB3181_P_NODE_19419_length_187_cov_2.378205_g19155_i0 PRJEB3181 19419 187 2.378205 4.44724335 Chromadorea 119089 Nematoda Nematoda 121 4.3299999999999996e-23   NTclustered gi|395805743|gb|JQ957880.1| 90724 g19155 i0 100 35.2513368983957 65 0 35 0 118 182 1247 1183 Aphelenchoides fragariae isolate AChoFra3 small subunit ribosomal RNA gene, partial sequence blastn 6592 122 0.991803278688525 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fragariae
24281706 24281706 PRJEB3181_P_NODE_13860_length_226_cov_77.579487_g13596_i0 PRJEB3181 13860 226 77.579487 175.32964062 Caenorhabditis remanei 31234 Nematoda Nematoda 76.8 1.19e-9   NTclustered gi|2445394821|ref|XM_053736084.1| 31234 g13596 i0 94 1.32300884955752 50 3 22 0 175 224 101 150 Caenorhabditis remanei uncharacterized protein (GCK72_024857), partial mRNA blastn 299 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;