RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB3181 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3539377 3539377 PRJEB3181_P_NODE_21243_length_177_cov_2.931507_g20979_i0 PRJEB3181 21243 177 2.931507 5.18876739 Dictyostelium 5782 Evosea other_Eukaryota 145 2.4e-30   NTclustered gi|330842931|ref|XM_003293373.1| 5786 g20979 i0 87.805 19.6497175141243 123 15 69 0 54 176 1089 967 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_90232), partial mRNA blastn 3478 145 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
4816737 4816737 PRJEB3181_S_NODE_18044_length_153_cov_2.000000_g17751_i0 PRJEB3181 18044 153 2 3.06 Flamella 490353 Evosea other_Eukaryota 220 3.25e-53   NTclustered gi|163943978|gb|EU186022.1| 490515 g17751 i0 97.656 78.0849673202614 128 3 84 0 26 153 958 831 Flamella arnhemensis 18S ribosomal RNA gene, partial sequence blastn 11947 220 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella arnhemensis
5158240 5158240 PRJEB3181_P_NODE_10665_length_260_cov_5.275109_g10401_i0 PRJEB3181 10665 260 5.275109 13.7152834 Heterostelium album 2086695 Evosea other_Eukaryota 128 3.83e-25   NTclustered gi|1160571044|ref|XM_020575016.1| 670386 g10401 i0 81.699 1.43846153846154 153 28 59 0 1 153 283 435 Polysphondylium pallidum PN500 40S ribosomal protein S14 (rps14), partial mRNA blastn 374 128 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
8983054 8983054 PRJEB3181_P_NODE_21628_length_175_cov_4.972222_g21363_i0 PRJEB3181 21628 175 4.972222 8.7013885 Phalansterium solitarium 136499 Evosea other_Eukaryota 58.4 3.17e-4   NTclustered gi|300078500|gb|GU001162.1| 136499 g21363 i0 100 0.348571428571429 31 0 18 0 95 125 4802 4772 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 61 58.4 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
8983085 8983085 PRJEB3181_P_NODE_448_length_768_cov_17.206242_g371_i0 PRJEB3181 448 768 17.206242 132.14393856 Phalansterium solitarium 136499 Evosea other_Eukaryota 141 1.6e-28   NTclustered gi|300078500|gb|GU001162.1| 136499 g371 i0 91.429 20.2877604166667 105 6 18 2 353 457 2118 2017 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15581 141 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
17566651 17566651 PRJEB3181_P_NODE_18654_length_191_cov_4.462500_g18390_i0 PRJEB3181 18654 191 4.4625 8.523375 Dictyostelium 5782 Evosea other_Eukaryota 193 9.28e-45   NTclustered gi|167579|gb|M14146.1|DDIACT15 44689 g18390 i0 91.429 74.9895287958115 140 12 73 0 52 191 1641 1502 D.discoideum actin 15 gene, complete cds blastn 14323 193 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17907518 17907518 PRJEB3181_P_NODE_12995_length_235_cov_1.901961_g12731_i0 PRJEB3181 12995 235 1.901961 4.46960835 Dictyostelium sp. 5784 Evosea other_Eukaryota 139 1.57e-28   NTclustered gi|2558374474|gb|OP168901.1| 5784 g12731 i0 81.143 2.26382978723404 175 31 74 2 61 234 46456 46283 Dictyostelium sp. voucher DSC<USA-NY>:DBS0350784 mitochondrion, complete genome blastn 532 139 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;