RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB3181 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19181606 19181606 PRJEB3181_S_NODE_6116_length_249_cov_2.995327_g5823_i0 PRJEB3181 6116 249 2.995327 7.45836423 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.023   NTclustered gi|1752392205|ref|XM_030998528.1| 7668 g5823 i0 100 0.899598393574297 28 0 11 0 143 170 869 842 PREDICTED: Strongylocentrotus purpuratus cell surface glycoprotein 1 (LOC764925), transcript variant X5, mRNA blastn 224 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
21390944 21390944 PRJEB3181_P_NODE_19957_length_184_cov_2.222222_g19693_i0 PRJEB3181 19957 184 2.222222 4.08888848 Opisthokonta 33154 Echinodermata other_Eukaryota 63.9 7.25e-6   NTclustered gi|2037953678|ref|XM_041621970.1| 7654 g19693 i0 97.297 2.51086956521739 37 1 20 0 114 150 1895 1859 PREDICTED: Lytechinus variegatus 60 kDa heat shock protein, mitochondrial-like (LOC121425882), mRNA blastn 462 63.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;