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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB3181 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2605871 2605871 PRJEB3181_P_NODE_12603_length_238_cov_10.458937_g12339_i0 PRJEB3181 12603 238 10.458937 24.89227006 Rhizophydiales sp. 2011922 Fungi Fungi 121 5.779999999999999e-23   NTclustered gi|2468790959|gb|OQ702906.1| 2011922 g12339 i0 90.217 32.5882352941176 92 9 39 0 147 238 2636 2545 Rhizophydiales sp. isolate PSC196 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7756 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     Rhizophydiales sp.
6091993 6091993 PRJEB3181_S_NODE_5245_length_264_cov_2.668122_g4952_i0 PRJEB3181 5245 264 2.668122 7.04384208 Eukaryota 2759 Fungi Fungi 187 6.34e-43   NTclustered gi|387156428|emb|HE806161.1| 1229259 g4952 i0 85.556 42.4318181818182 180 24 68 1 85 264 1767 1944 Uncultured Chytridium partial 26S rRNA gene, clone EopYyyy3 blastn 11202 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae   uncultured Chytridium
7708350 7708350 PRJEB3181_S_NODE_14307_length_171_cov_2.161765_g14014_i0 PRJEB3181 14307 171 2.161765 3.69661815 Phlyctochytrium planicorne 261098 Fungi Fungi 71.3 3.95e-8   NTclustered gi|527478426|gb|JX905514.1| 261098 g14014 i0 82.143 4 84 13 49 2 17 100 34 115 Phlyctochytrium planicorne isolate ARG 109 28S ribosomal RNA gene, partial sequence blastn 684 71.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne
8983036 8983036 PRJEB3181_P_NODE_17408_length_199_cov_2.309524_g17144_i0 PRJEB3181 17408 199 2.309524 4.59595276 Polychytrium aggregatum 110093 Fungi Fungi 134 6e-27   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g17144 i0 84.848 45.3467336683417 132 20 66 0 64 195 578 447 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 9024 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
11192184 11192184 PRJEB3181_P_NODE_6449_length_326_cov_54.183051_g6191_i0 PRJEB3181 6449 326 54.183051 176.63674626 Eukaryota 2759 Fungi Fungi 189 2.2399999999999992e-43   NTclustered gi|387156428|emb|HE806161.1| 1229259 g6191 i0 85.027 35.680981595092 187 26 57 1 6 192 1951 1767 Uncultured Chytridium partial 26S rRNA gene, clone EopYyyy3 blastn 11632 189 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae   uncultured Chytridium
16632859 16632859 PRJEB3181_P_NODE_3594_length_403_cov_991.336022_g3357_i0 PRJEB3181 3594 403 991.336022 3995.08416866 Arkaya sp. JEL581 1134071 Fungi Fungi 200 1.2999999999999999e-46   NTclustered gi|386165089|gb|HQ901709.1| 1134071 g3357 i0 77.487 31.8039702233251 382 54 93 21 4 379 357 2 Arkaya sp. JEL581 28S large subunit ribosomal RNA gene, partial sequence blastn 12817 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Arkaya Arkaya sp. JEL581

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;