RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB3181 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2264107 2264107 PRJEB3181_P_NODE_1202_length_560_cov_15.992439_g1054_i0 PRJEB3181 1202 560 15.992439 89.5576584 Trebouxiophyceae 75966 Plants Plants 63.9 2.55e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g1054 i0 95 11.0267857142857 40 2 7 0 127 166 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6175 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
3539416 3539416 PRJEB3181_S_NODE_1823_length_381_cov_56.150289_g1531_i0 PRJEB3181 1823 381 56.150289 213.93260109 Eukaryota 2759 Plants Plants 671 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g1531 i0 100 95.1076115485564 363 0 95 0 19 381 872 510 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 36236 671 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
5158487 5158487 PRJEB3181_S_NODE_4145_length_289_cov_26045.539370_g3852_i0 PRJEB3181 4145 289 26045.53937 75271.6087793 Chlamydomonas incerta 51695 Plants Plants 113 1.21e-20   NTclustered gi|74272608|gb|DQ122869.1| 51695 g3852 i0 84.348 18.0968858131488 115 18 40 0 55 169 517 631 Chlamydomonas incerta 40S ribosomal protein S8 mRNA, complete cds blastn 5230 113 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
7366411 7366411 PRJEB3181_P_NODE_24786_length_162_cov_1.473282_g24521_i0 PRJEB3181 24786 162 1.473282 2.38671684 Eukaryota 2759 Plants Plants 265 1.5899999999999998e-66   NTclustered gi|1201359271|gb|MF040793.1| 3078 g24521 i0 98.658 99.8703703703704 149 2 92 0 1 149 959 811 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 16179 265 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
7708248 7708248 PRJEB3181_P_NODE_23807_length_166_cov_0.955556_g23542_i0 PRJEB3181 23807 166 0.955556 1.58622296 Polulichloris maxima 2704661 Plants Plants 250 4.59e-62   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g23542 i0 96.078 10.789156626506 153 6 92 0 14 166 125437 125285 Polulichloris maxima clone L123 chloroplast, complete genome blastn 1791 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
7708519 7708519 PRJEB3181_S_NODE_8987_length_211_cov_2.090909_g8694_i0 PRJEB3181 8987 211 2.090909 4.41181799 Trebouxia sp. A1-2 2608996 Plants Plants 91.6 3.93e-14   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g8694 i0 88.312 2.89099526066351 77 8 36 1 78 153 86205 86129 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 610 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
9916996 9916996 PRJEB3181_P_NODE_16628_length_204_cov_18.502890_g16364_i0 PRJEB3181 16628 204 18.50289 37.7458956 Tetradesmus 91192 Plants Plants 342 9.429999999999999e-90   NTclustered gi|1240946771|gb|KX756229.1| 3088 g16364 i0 97.5 144.196078431373 200 5 98 0 1 200 80565 80764 Tetradesmus obliquus chloroplast, complete genome blastn 29416 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
10258762 10258762 PRJEB3181_P_NODE_9_length_1790_cov_108.555429_g5_i0 PRJEB3181 9 1790 108.555429 1943.1421791 Bathycoccus prasinos 41875 Plants Plants 86.1 1.82e-11   NTclustered gi|290770787|emb|FN563099.1| 41875 g5 i0 89.706 3.87150837988827 68 5 4 2 1149 1214 2256 2189 Bathycoccus prasinos plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain SCCAP K-0417 blastn 6930 86.1 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
12809532 12809532 PRJEB3181_P_NODE_5711_length_343_cov_3.003205_g5457_i0 PRJEB3181 5711 343 3.003205 10.30099315 Micromonas commoda 296587 Plants Plants 187 8.52e-43   NTclustered gi|255082645|ref|XM_002504263.1| 296587 g5457 i0 86.127 16.8542274052478 173 24 50 0 169 341 488 316 Micromonas commoda predicted protein mRNA blastn 5781 187 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
13742311 13742311 PRJEB3181_P_NODE_4811_length_365_cov_100.508982_g4563_i0 PRJEB3181 4811 365 100.508982 366.8577843 Eukaryota 2759 Plants Plants 660 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g4563 i0 100 97.6 357 0 98 0 9 365 872 516 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 35624 660 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
14084228 14084228 PRJEB3181_P_NODE_2032_length_484_cov_12.750552_g1848_i0 PRJEB3181 2032 484 12.750552 61.71267168 Ostreococcus tauri 70448 Plants Plants 209 2.65e-49   NTclustered gi|308805007|ref|XM_003079768.1| 70448 g1848 i0 80.277 12.8553719008264 289 47 59 9 57 340 419 136 Ostreococcus tauri Nucleic acid-binding, OB-fold (OT_ostta06g01860), partial mRNA blastn 6222 209 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
17907514 17907514 PRJEB3181_P_NODE_12395_length_240_cov_17.215311_g12131_i0 PRJEB3181 12395 240 17.215311 41.3167464 Caulerpa verticillata 177082 Plants Plants 82.4 2.75e-11   NTclustered gi|1509835109|ref|NC_039523.1| 177082 g12131 i0 96 2.59583333333333 50 2 21 0 42 91 32160 32111 Caulerpa verticillata voucher HV05119 chloroplast, complete genome blastn 623 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Caulerpaceae Caulerpa Caulerpa verticillata
19181496 19181496 PRJEB3181_S_NODE_11836_length_187_cov_2.934211_g11543_i0 PRJEB3181 11836 187 2.934211 5.48697457 Caulerpa verticillata 177082 Plants Plants 76.8 9.5e-10   NTclustered gi|1509835109|ref|NC_039523.1| 177082 g11543 i0 97.727 0.614973262032086 44 1 24 0 1 44 32154 32111 Caulerpa verticillata voucher HV05119 chloroplast, complete genome blastn 115 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Caulerpaceae Caulerpa Caulerpa verticillata
20456764 20456764 PRJEB3181_P_NODE_22757_length_170_cov_9.712230_g22492_i0 PRJEB3181 22757 170 9.71223 16.510791 Chlamydomonas sp. TK-1983 3056 Plants Plants 219 1.3199999999999996e-52   NTclustered gi|174203|gb|K02345.1|CRERRA 3056 g22492 i0 100 0.694117647058824 118 0 69 0 22 139 1 118 Chlamydomonas sp. TK-1983 5S ribosomal RNA gene, complete sequence blastn 118 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. TK-1983
21732632 21732632 PRJEB3181_P_NODE_11258_length_253_cov_4.279279_g10994_i0 PRJEB3181 11258 253 4.279279 10.82657587 Micromonas commoda 296587 Plants Plants 187 6.0299999999999984e-43   NTclustered gi|255082645|ref|XM_002504263.1| 296587 g10994 i0 86.127 22.8498023715415 173 24 68 0 3 175 316 488 Micromonas commoda predicted protein mRNA blastn 5781 187 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
23007961 23007961 PRJEB3181_P_NODE_1679_length_510_cov_9.384134_g1512_i0 PRJEB3181 1679 510 9.384134 47.8590834 Trebouxia sp. A1-2 2608996 Plants Plants 102 4.89e-17   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g1512 i0 85.294 25.8921568627451 102 12 20 2 263 364 86129 86227 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 13205 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
23941185 23941185 PRJEB3181_P_NODE_20759_length_179_cov_13.337838_g20495_i0 PRJEB3181 20759 179 13.337838 23.87473002 Eukaryota 2759 Plants Plants 331 1.74e-86   NTclustered gi|1201359271|gb|MF040793.1| 3078 g20495 i0 100 83.2960893854749 179 0 100 0 1 179 182 360 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 14910 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;