RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB3181 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
56104 56104 PRJEB3181_S_NODE_16701_length_159_cov_1.612903_g16408_i0 PRJEB3181 16701 159 1.612903 2.56451577 Terriglobia bacterium 2081523 Bacteria Bacteria 158 2.71e-34   NTclustered gi|2621703257|emb|OY762429.1| 2081523 g16408 i0 90.164 218.666666666667 122 10 76 2 25 145 2748848 2748968 MAG: Terriglobia bacterium isolate aa40cff0-ace7-4b53-8087-0ef5d3f4acaf genome assembly, chromosome: 1 blastn 34768 158 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
16632976 16632976 PRJEB3181_S_NODE_2634_length_339_cov_12.680921_g2341_i0 PRJEB3181 2634 339 12.680921 42.98832219 Acidobacteriota bacterium 1978231 Bacteria Bacteria 396 1.28e-105   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g2341 i0 89.711 85.9793510324484 311 31 91 1 30 339 317553 317243 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 29147 396 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
17907546 17907546 PRJEB3181_P_NODE_18135_length_194_cov_6.018405_g17871_i0 PRJEB3181 18135 194 6.018405 11.6757057 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 185 1.5799999999999994e-42   NTclustered gi|2874253677|emb|OY969111.1| 171953 g17871 i0 84.211 99.5618556701031 209 14 99 11 3 194 716012 716218 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 19315 185 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
20456868 20456868 PRJEB3181_S_NODE_17817_length_154_cov_1.537815_g17524_i0 PRJEB3181 17817 154 1.537815 2.3682351 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 82.4 1.61e-11   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g17524 i0 87.5 1.5 72 7 47 2 43 114 803810 803879 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 231 82.4 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;