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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 9 ✖

bioproject 1

  • PRJEB3181 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3539385 3539385 PRJEB3181_P_NODE_9503_length_275_cov_54.147541_g9239_i0 PRJEB3181 9503 275 54.147541 148.90573775 Pseudomonadota 1224 Bacteria Bacteria 449 7.670000000000001e-122   NTclustered gi|202950689|emb|FM206054.1| 34034 g9239 i0 100 93.8727272727273 243 0 88 0 1 243 243 1 Uncultured delta proteobacterium partial 16S rRNA gene, clone GW_1 blastn 25815 449 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
5158516 5158516 PRJEB3181_S_NODE_6045_length_250_cov_11.200000_g5752_i0 PRJEB3181 6045 250 11.2 28 Dissulfurimicrobium hydrothermale 1750598 Bacteria Bacteria 222 1.63e-53   NTclustered gi|2190143862|gb|CP085041.1| 1750598 g5752 i0 83.077 154.144 260 28 100 11 1 250 691845 692098 Dissulfurimicrobium hydrothermale strain Sh68 chromosome, complete genome blastn 38536 222 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria     Dissulfurimicrobium Dissulfurimicrobium hydrothermale
9917001 9917001 PRJEB3181_P_NODE_25548_length_159_cov_2.007812_g25283_i0 PRJEB3181 25548 159 2.007812 3.19242108 root 1 Root_unresolved Root_unresolved 294 1.98e-75   NTclustered gi|451917247|gb|KC451111.1| 34034 g25283 i0 100 100 159 0 100 0 1 159 234 76 Uncultured delta proteobacterium clone RLBp852 16S ribosomal RNA gene, partial sequence blastn 15900 294 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
9917067 9917067 PRJEB3181_S_NODE_5328_length_262_cov_77.048458_g5035_i0 PRJEB3181 5328 262 77.048458 201.86695996 Pseudomonadota 1224 Bacteria Bacteria 479 9.249999999999999e-131   NTclustered gi|202950689|emb|FM206054.1| 34034 g5035 i0 100 104.946564885496 259 0 99 0 4 262 1 259 Uncultured delta proteobacterium partial 16S rRNA gene, clone GW_1 blastn 27496 479 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12467963 12467963 PRJEB3181_S_NODE_16230_length_161_cov_3.912698_g15937_i0 PRJEB3181 16230 161 3.912698 6.29944378 Pseudomonadati 3379134 Bacteria Bacteria 283 4.3599999999999995e-72   NTclustered gi|343206979|gb|JN371756.1| 34034 g15937 i0 100 94.583850931677 153 0 95 0 9 161 433 281 Uncultured delta proteobacterium clone B12-54 16S ribosomal RNA gene, partial sequence blastn 15228 283 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12809470 12809470 PRJEB3181_P_NODE_19251_length_188_cov_1.904459_g18987_i0 PRJEB3181 19251 188 1.904459 3.58038292 uncultured delta proteobacterium 34034 Bacteria Bacteria 327 2.39e-85   NTclustered gi|1214631403|gb|MF440009.1| 34034 g18987 i0 100 93.2659574468085 177 0 94 0 12 188 430 254 Uncultured delta proteobacterium clone cafs853 16S ribosomal RNA gene, partial sequence blastn 17534 327 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15358169 15358169 PRJEB3181_S_NODE_11973_length_186_cov_2.258278_g11680_i0 PRJEB3181 11973 186 2.258278 4.20039708 uncultured delta proteobacterium 34034 Bacteria Bacteria 196 6.94e-46   NTclustered gi|374854163|dbj|AP011765.1| 34034 g11680 i0 99.083 117.360215053763 109 1 59 0 13 121 13792 13900 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 21829 196 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18840544 18840544 PRJEB3181_S_NODE_1995_length_369_cov_98.257485_g1703_i0 PRJEB3181 1995 369 98.257485 362.57011965 Bacteria 2 Bacteria Bacteria 623 5.919999999999999e-174   NTclustered gi|375245443|gb|JQ653850.1| 34034 g1703 i0 98.05 95.7208672086721 359 5 97 2 11 369 1 357 Uncultured delta proteobacterium clone 199 16S ribosomal RNA gene, partial sequence blastn 35321 623 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
23008093 23008093 PRJEB3181_S_NODE_12759_length_181_cov_1.369863_g12466_i0 PRJEB3181 12759 181 1.369863 2.47945203 uncultured delta proteobacterium 34034 Bacteria Bacteria 152 1.47e-32   NTclustered gi|374854163|dbj|AP011765.1| 34034 g12466 i0 82.857 273.182320441989 175 25 96 4 9 181 15079 14908 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 49446 152 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;