RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB3181" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJEB3181 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1330384 1330384 PRJEB3181_S_NODE_17542_length_155_cov_2.258333_g17249_i0 PRJEB3181 17542 155 2.258333 3.50041615 Patescibacteria group bacterium 2052139 Bacteria Bacteria 115 1.6e-21   NTclustered gi|2621785934|emb|OY782392.1| 2052139 g17249 i0 82.443 0.845161290322581 131 23 85 0 25 155 548040 547910 MAG: Patescibacteria group bacterium isolate 573f42cd-6ce4-4b95-a45b-0ed028197a55 genome assembly, chromosome: 1 blastn 131 115 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
8983051 8983051 PRJEB3181_P_NODE_20708_length_180_cov_1.597315_g20444_i0 PRJEB3181 20708 180 1.597315 2.875167 Candidatus Methylomirabilis oxygeniifera 671143 Bacteria Bacteria 75 3.26e-9   NTclustered gi|507148395|ref|NR_103198.1| 671143 g20444 i0 83.133 6.23333333333333 83 12 46 2 12 93 532 451 Candidatus Methylomirabilis oxyfera 23S ribosomal RNA gene, complete sequence blastn 1122 75 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis oxygeniifera
12809433 12809433 PRJEB3181_P_NODE_10451_length_262_cov_9.640693_g10187_i0 PRJEB3181 10451 262 9.640693 25.25861566 Candidatus Aminicenantes bacterium 2052149 Bacteria Bacteria 307 4.62e-79   NTclustered gi|2874253756|emb|OY969696.1| 2052149 g10187 i0 87.732 111.354961832061 269 25 100 5 1 262 971479 971212 MAG: Candidatus Aminicenantes bacterium isolate MFD04408.bin.1.14 genome assembly, chromosome: 1 blastn 29175 307 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium
14084358 14084358 PRJEB3181_S_NODE_15632_length_164_cov_2.031008_g15339_i0 PRJEB3181 15632 164 2.031008 3.33085312 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 89.8 1.04e-13   NTclustered gi|563351663|gb|CP006913.1| 1394709 g15339 i0 79.562 3.8109756097561 137 19 80 9 18 148 125175 125042 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 625 89.8 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;